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Carg06438 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06438
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDEAD-box ATP-dependent RNA helicase 20
Genome locationCarg_Chr14:9888961..9891097
RNA-Seq ExpressionCarg06438
SyntenyCarg06438
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581855.1 DEAD-box ATP-dependent RNA helicase 20, partial [Cucurbita argyrosperma subsp. sororia]1.2e-50100Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

KAG7018287.1 DEAD-box ATP-dependent RNA helicase 20 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-56100Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFPGTFLENFYL
        FRDVGFPGTFLENFYL
Subjt:  FRDVGFPGTFLENFYL

XP_022956332.1 DEAD-box ATP-dependent RNA helicase 20 [Cucurbita moschata]5.8e-5099.07Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYS SVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

XP_022980599.1 DEAD-box ATP-dependent RNA helicase 20 [Cucurbita maxima]1.7e-4998.13Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYS SVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREV+EYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

XP_023528151.1 DEAD-box ATP-dependent RNA helicase 20-like [Cucurbita pepo subsp. pepo]1.7e-4998.13Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYS SVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREV+EYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

TrEMBL top hitse value%identityAlignment
A0A0A0LFT6 Uncharacterized protein2.2e-4792.52Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSG+GGSTGY GSV+SSSSKSD+Y SEAP+K+DLDGLPHFEKNFYIEAPSVAAMTEREV+EYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

A0A1S3BHT9 DEAD-box ATP-dependent RNA helicase 206.4e-4792.52Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSG+GGSTGYSGSV+SSSSK+D+Y SEA +KVDLDGLPHFEKNFYIEAPSVAAMTEREV+EYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

A0A6J1D4P2 DEAD-box ATP-dependent RNA helicase 208.4e-4792.52Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYD RSSDPTSYRDRRSDSGFGGSTGYS SV+SSSSKSD+YASEAPRKVDLDGLP FEKNFY+EAPSVAAMTEREV+EYRQRREIT+EGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

A0A6J1GW12 DEAD-box ATP-dependent RNA helicase 202.8e-5099.07Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYS SVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

A0A6J1IZQ3 DEAD-box ATP-dependent RNA helicase 208.1e-5098.13Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSRSSDPTSYRDRRSDSGFGGSTGYS SVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREV+EYRQRREITVEGRDVPKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFP
        FRDVGFP
Subjt:  FRDVGFP

SwissProt top hitse value%identityAlignment
A1DGZ7 ATP-dependent RNA helicase dbp25.3e-1446.51Show/hide
Query:  GFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFP
        G+G   G  G        S+  A    +  DLD LP FEK+FY E P VAA +EREV+E+R++ E+TV+GR+VP+PV++F + GFP
Subjt:  GFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFP

Q4X195 ATP-dependent RNA helicase dbp26.2e-1547.67Show/hide
Query:  GFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFP
        G+GG  G  G        S+  A    +  DLD LP FEK+FY E P VAA +EREV+E+R++ E+TV+GR+VP+PV++F + GFP
Subjt:  GFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFP

Q5QMN3 DEAD-box ATP-dependent RNA helicase 202.0e-2962.5Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSR+D R++DP SYRDRRS+  FGG T       + +SK+D  A+ A    DLDGLP FEKNFY+E+PSVA MTE EV+ YR+RREITVEGRDVPKPV+ 
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFPGTFLE
        FRDVGFP   L+
Subjt:  FRDVGFPGTFLE

Q8W4R3 DEAD-box ATP-dependent RNA helicase 307.4e-1648.48Show/hide
Query:  YRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE
        Y DR     +GG  G  G     SSK +  +   P K +   L HFEKNFY+E+P+V AMTE++V  YR  R+I+VEGRDVPKP+K F+D  FP   LE
Subjt:  YRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE

Q9C718 DEAD-box ATP-dependent RNA helicase 201.5e-3769.64Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSR+ D TSYRDRRSDSGFGG++ Y  S   +SSK D+  +E+PRK+DLDGL  FEKNFY+E+P+VAAMT+ EV+EYR+ REITVEG+D+PKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFPGTFLE
        FRDVGFP   LE
Subjt:  FRDVGFPGTFLE

Arabidopsis top hitse value%identityAlignment
AT1G20920.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-0842.59Show/hide
Query:  FEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE
        F KNFYIE   ++ MT+ EV+ YR+  E+ V G+DVP+P+K +   G     L+
Subjt:  FEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE

AT1G20920.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.0e-0842.59Show/hide
Query:  FEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE
        F KNFYIE   ++ MT+ EV+ YR+  E+ V G+DVP+P+K +   G     L+
Subjt:  FEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE

AT1G55150.1 DEA(D/H)-box RNA helicase family protein1.1e-3869.64Show/hide
Query:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS
        MSRYDSR+ D TSYRDRRSDSGFGG++ Y  S   +SSK D+  +E+PRK+DLDGL  FEKNFY+E+P+VAAMT+ EV+EYR+ REITVEG+D+PKPVKS
Subjt:  MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKS

Query:  FRDVGFPGTFLE
        FRDVGFP   LE
Subjt:  FRDVGFPGTFLE

AT5G63120.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.2e-1748.48Show/hide
Query:  YRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE
        Y DR     +GG  G  G     SSK +  +   P K +   L HFEKNFY+E+P+V AMTE++V  YR  R+I+VEGRDVPKP+K F+D  FP   LE
Subjt:  YRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE

AT5G63120.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.2e-1748.48Show/hide
Query:  YRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE
        Y DR     +GG  G  G     SSK +  +   P K +   L HFEKNFY+E+P+V AMTE++V  YR  R+I+VEGRDVPKP+K F+D  FP   LE
Subjt:  YRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTFLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCGTTACGACAGCCGCTCCTCCGATCCCACTTCTTACCGCGACCGTAGAAGTGATTCAGGTTTTGGTGGCTCTACAGGCTATAGCGGTTCAGTTCAATCCTCCTC
TAGCAAGAGTGACCATTATGCTTCTGAGGCCCCCAGAAAGGTGGATTTGGATGGATTGCCTCATTTTGAGAAGAACTTCTACATTGAGGCACCATCAGTGGCTGCAATGA
CAGAGAGAGAGGTTGACGAGTATCGGCAAAGGAGGGAGATTACTGTAGAAGGTCGTGATGTTCCAAAACCAGTCAAGTCTTTCCGGGATGTTGGGTTTCCTGGTACTTTT
CTTGAGAACTTTTATCTTTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAGAAAAGTGTAGCCGTACGATTAGCAAGCCTCGATCGAGCGAAGGGCAGATAGAGTCCTCCCCGTTGTTCGTTTTCTCGCCTTTACCGAACAGAGGCAGCTTCTAA
AACCCTTCCCACTTCTTTCCGGCGAGTTCCGGCGCCATGAGTCGTTACGACAGCCGCTCCTCCGATCCCACTTCTTACCGCGACCGTAGAAGTGATTCAGGTTTTGGTGG
CTCTACAGGCTATAGCGGTTCAGTTCAATCCTCCTCTAGCAAGAGTGACCATTATGCTTCTGAGGCCCCCAGAAAGGTGGATTTGGATGGATTGCCTCATTTTGAGAAGA
ACTTCTACATTGAGGCACCATCAGTGGCTGCAATGACAGAGAGAGAGGTTGACGAGTATCGGCAAAGGAGGGAGATTACTGTAGAAGGTCGTGATGTTCCAAAACCAGTC
AAGTCTTTCCGGGATGTTGGGTTTCCTGGTACTTTTCTTGAGAACTTTTATCTTTAG
Protein sequenceShow/hide protein sequence
MSRYDSRSSDPTSYRDRRSDSGFGGSTGYSGSVQSSSSKSDHYASEAPRKVDLDGLPHFEKNFYIEAPSVAAMTEREVDEYRQRREITVEGRDVPKPVKSFRDVGFPGTF
LENFYL