; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06475 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06475
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationCarg_Chr14:10152934..10154293
RNA-Seq ExpressionCarg06475
SyntenyCarg06475
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581890.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.3e-74100Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-74100Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_008447512.1 PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo]6.6e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]2.7e-7399.31Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_023529177.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo]2.3e-7298.61Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQS RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein7.2e-7296.53Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAG KLPLRP+RQ+FRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAY+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic3.2e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A5D3C9C3 Photosystem I reaction center subunit VI3.2e-7297.22Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP TVKGLGGSSLAG KLPLRP+RQSFRPK+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1GUS6 photosystem I reaction center subunit VI, chloroplastic-like1.3e-7399.31Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like1.3e-7399.31Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic5.5e-5373.29Show/hide
Query:  LATLAAVQPVTVKGLGGSSLAGTKLPLRPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTK
        +A+L AVQPV VKGL GSS++G KL +RP+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTK
Subjt:  LATLAAVQPVTVKGLGGSSLAGTKLPLRPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTK

Query:  RGLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        RGLLLKFLLLGGG+ +AY SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  RGLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic2.1e-6080.69Show/hide
Query:  MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP + VKGLGGSSL G KL ++P+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic1.1e-6179.86Show/hide
Query:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP T+KGL GSS+AGTKL ++P RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL+LGGG+ L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic2.1e-6080.69Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAG KL ++P+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic7.9e-6078.62Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAG KL ++P+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H21.5e-6180.69Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP   VKGLGGSSLAG KL ++P+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-15.6e-6178.62Show/hide
Query:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P   +KGLGGSSLAG KL ++P+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL+LGGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLLGGGATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAACTAAGCTCCCTCTCAGGCCCACTCGCCAGAGCTT
CAGACCAAAAAGCTTCAAGGCTGGTGCTGTGGTGGCTAAGTACGGTGACAAAAGTGTTTACTTCGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCCGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTTCTAGGCGGT
GGAGCCACATTAGCTTATTACAGTGCCACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAGCTTGGGCCTCGTGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCTTAGCAACATTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTTGGTGGAAGCTCCCTTGCCGGAACTAAGCTCCCTCTCAGGCCCACTCGCCAGAGCTT
CAGACCAAAAAGCTTCAAGGCTGGTGCTGTGGTGGCTAAGTACGGTGACAAAAGTGTTTACTTCGATTTGGAGGATTTGGGCAACACTACTGGACAGTGGGATTTGTATG
GATCTGATGCTCCTTCACCATACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCCGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTTCTAGGCGGT
GGAGCCACATTAGCTTATTACAGTGCCACTGCCCCAGATGATGTTCTTCCCATCAAGAAAGGACCTCAACTTCCACCAAAGCTTGGGCCTCGTGGCAAGATCTAA
Protein sequenceShow/hide protein sequence
MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGG
GATLAYYSATAPDDVLPIKKGPQLPPKLGPRGKI