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Carg06477 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06477
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
Genome locationCarg_Chr14:10158127..10158699
RNA-Seq ExpressionCarg06477
SyntenyCarg06477
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581892.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]2.5e-49100Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD
        MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD

Query:  IV
        IV
Subjt:  IV

XP_010098076.1 dynein light chain 1, cytoplasmic [Morus notabilis]6.0e-3579.38Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS
        MLEGKALI DTDMP+K+QIQAM AAS+ALD+YDVFD +SIAAHIKK+FD  +G GWQCVVGSNFG FFTHS+GTFIYFTLETL+FLIFKG + S SS
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS

XP_022955724.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]3.3e-4999.02Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD
        MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPS+SSRVD
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD

Query:  IV
        IV
Subjt:  IV

XP_023529016.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]5.6e-4999.02Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD
        MLEGKALIADTDMPLKLQIQAMKAASEALDLYDV+DSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD

Query:  IV
        IV
Subjt:  IV

XP_038713603.1 dynein light chain LC6, flagellar outer arm-like [Tripterygium wilfordii]6.0e-3578.35Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS
        MLEGKAL+ DTDMP+K+QIQAM +AS+ALDLYDVFD KSIAAHIKK+FD G+G GWQCVVGSNFG +FTHS+GTFIYF LETLNFLIFKG S   S+
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS

TrEMBL top hitse value%identityAlignment
A0A022Q4N8 Dynein light chain5.0e-3581.25Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVS
        MLEGKALI DTDMPLK+QIQAM  AS+ALDLYDV D KSIAAHIKK+FD  +G GWQCVVGSNFG FFTHS+G+FIYFTLETLNFLIFKG S S S
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVS

A0A1U7ZJG1 Dynein light chain5.0e-3579.59Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS--PSVS
        MLEGKALI DTDMP+K+QIQAM +AS+ALDLYDVFD KSIAAHIKK+FD  +G GWQCVVGSNFG FFTHSQGTFIYF LETL FLIFKG S  P++S
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS--PSVS

A0A6J1GX40 Dynein light chain1.6e-4999.02Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD
        MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPS+SSRVD
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVD

Query:  IV
        IV
Subjt:  IV

A0A7J7D5T1 Dynein light chain2.9e-3578.35Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS
        MLEGKAL+ DTDMP+K+QIQAM +AS+ALDLYDVFD KSIAAHIKK+FD G+G GWQCVVGSNFG +FTHS+GTFIYF LETLNFLIFKG S   S+
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS

W9RUV7 Dynein light chain2.9e-3579.38Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS
        MLEGKALI DTDMP+K+QIQAM AAS+ALD+YDVFD +SIAAHIKK+FD  +G GWQCVVGSNFG FFTHS+GTFIYFTLETL+FLIFKG + S SS
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSS

SwissProt top hitse value%identityAlignment
P61273 Dynein light chain 1, cytoplasmic1.8e-1343.82Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK
        M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK+FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK

P61285 Dynein light chain 1, cytoplasmic1.8e-1343.82Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK
        M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK+FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK

P63167 Dynein light chain 1, cytoplasmic1.8e-1343.82Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK
        M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK+FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK

P63168 Dynein light chain 1, cytoplasmic1.8e-1343.82Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK
        M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK+FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK

P63169 Dynein light chain 1, cytoplasmic1.8e-1343.82Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK
        M + KA+I + DM  ++Q  +++ A++AL+ Y++   K IAAHIKK+FD  +   W C+VG NFGS+ TH    FIYF L  +  L+FK
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 113.8e-1969.49Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCV
        MLEGKA++ D+DMP+K+Q+QAM  AS+ALDL+DVFD KSIA HIKK+FD+ +G GWQCV
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.3e-3575Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS
        MLEGKA++ D+DMP+K+Q+QAM  AS+ALDL+DVFD KSIA HIKK+FD+ +G GWQCVVGSNFG FFTHS+GTFIYF LETL FLIFKG S
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPS

AT3G16120.1 Dynein light chain type 1 family protein8.4e-3575.56Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKG
        MLEGKA + +TDMP+K+Q+QAMK AS++LDL+DVFDS SIAAHIKK+FD+ +G GWQCVVG+NFG FFTHS+GTFIYF L TLNFLIFKG
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKG

AT4G27360.1 Dynein light chain type 1 family protein1.1e-2152.22Show/hide
Query:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKG
        MLEGKA++ DTDM   ++  A+  AS+ALD +DV +   IA  IKK+FD  +G GWQC+VG++FGSF TH  G FI+F++ +L  L+FKG
Subjt:  MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKG

AT5G20110.1 Dynein light chain type 1 family protein1.3e-1648.78Show/hide
Query:  IADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK
        I   DMP  +Q  A + A   LD  + F SK +A ++KK+FD G+G  W C+VGS+FGSF THS G FIYF+++ L  L+FK
Subjt:  IADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGAAGGGAAAGCTTTGATTGCTGATACAGACATGCCTCTCAAGTTGCAGATCCAAGCCATGAAAGCTGCTTCTGAAGCTCTCGATCTTTATGATGTTTTTGACTC
TAAATCCATTGCTGCCCACATCAAGAAGAAGTTTGATGATGGGCATGGGATGGGATGGCAATGCGTGGTGGGTTCCAATTTTGGGAGCTTTTTCACTCATTCTCAAGGGA
CTTTCATCTACTTCACTTTGGAGACTCTCAACTTTCTTATCTTCAAAGGCCCTTCTCCTTCCGTATCGAGTCGCGTAGATATCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGAAGGGAAAGCTTTGATTGCTGATACAGACATGCCTCTCAAGTTGCAGATCCAAGCCATGAAAGCTGCTTCTGAAGCTCTCGATCTTTATGATGTTTTTGACTC
TAAATCCATTGCTGCCCACATCAAGAAGAAGTTTGATGATGGGCATGGGATGGGATGGCAATGCGTGGTGGGTTCCAATTTTGGGAGCTTTTTCACTCATTCTCAAGGGA
CTTTCATCTACTTCACTTTGGAGACTCTCAACTTTCTTATCTTCAAAGGCCCTTCTCCTTCCGTATCGAGTCGCGTAGATATCGTTTGATTTTCTTATTTTAGTTTCTAA
AAACTGAGCTTTTTTGTGATCAAACAATATCATACCACTGTATAGAGATACGTGAAAGATCTAACCATGTTGATAGAATTATCTAGTGT
Protein sequenceShow/hide protein sequence
MLEGKALIADTDMPLKLQIQAMKAASEALDLYDVFDSKSIAAHIKKKFDDGHGMGWQCVVGSNFGSFFTHSQGTFIYFTLETLNFLIFKGPSPSVSSRVDIV