; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06500 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06500
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTATA-binding protein-associated factor 2N-like
Genome locationCarg_Chr14:10306138..10306992
RNA-Seq ExpressionCarg06500
SyntenyCarg06500
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581915.1 Lys-63-specific deubiquitinase BRCC36, partial [Cucurbita argyrosperma subsp. sororia]7.6e-72100Show/hide
Query:  TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRG
        TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRG
Subjt:  TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRG

Query:  ISPFPFATPARSPASAWKSGDWICAR
        ISPFPFATPARSPASAWKSGDWICAR
Subjt:  ISPFPFATPARSPASAWKSGDWICAR

KAG7018349.1 hypothetical protein SDJN02_20217, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-72100Show/hide
Query:  TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRG
        TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRG
Subjt:  TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRG

Query:  ISPFPFATPARSPASAWKSGDWICARV
        ISPFPFATPARSPASAWKSGDWICARV
Subjt:  ISPFPFATPARSPASAWKSGDWICARV

XP_022955940.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]3.7e-6696.75Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPKT GGGGARAGSGFGF GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS FDFDLPRPTPRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F FATPARSPASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

XP_022979604.1 ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima]5.9e-6493.5Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPK GGGG  RAGSGFGF GSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMS FDFDLPRPTPRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F F TPARSPASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

XP_023528279.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]5.5e-6290.24Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        MNRPGDWNCTSCHH NFQRRDICQRCGDPKT  G   R GSGFGF GSDVRPGDWYCSVGNCGAHNFA+RSSCFKCGAFKDDMS FDFDLPRPTPRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F F+TPARSPASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

TrEMBL top hitse value%identityAlignment
A0A0A0KTI0 Uncharacterized protein4.4e-5783.74Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG G R GSGFG+ GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS FDFD+PR +PRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F F +PAR+ ASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

A0A1S3BZE4 uncharacterized RNA-binding protein C17H9.04c-like8.0e-5985.37Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG G R GSGFG+ GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS FDFD+PRP+PRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F FA+PAR+ ASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

A0A5A7TRE1 Putative RNA-binding protein C17H9.04c-like3.5e-5484.62Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG G R GSGFG+ GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS FDFD+PRP+PRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSG
        F FA+PAR+ ASAWKSG
Subjt:  FPFATPARSPASAWKSG

A0A6J1GWG9 uncharacterized RNA-binding protein C17H9.04c-like1.8e-6696.75Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPKT GGGGARAGSGFGF GSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS FDFDLPRPTPRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F FATPARSPASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

A0A6J1IX27 ranBP2-type zinc finger protein At1g67325-like2.8e-6493.5Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP
        MNRPGDWNCTSCHHLNFQRRDICQRCGDPK GGGG  RAGSGFGF GSDVRPGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMS FDFDLPRPTPRGISP
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISP

Query:  FPFATPARSPASAWKSGDWICAR
        F F TPARSPASAWKSGDWICAR
Subjt:  FPFATPARSPASAWKSGDWICAR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c1.3e-0530Show/hide
Query:  RPGDWNCTSCHHLNFQRRDICQRCGDP-------KTG--------------GGGGARAGSGFG--------------------------------FAGS-
        RPGDWNC  C   NFQRR  C RC  P        TG              G G +   + +G                                F G+ 
Subjt:  RPGDWNCTSCHHLNFQRRDICQRCGDP-------KTG--------------GGGGARAGSGFG--------------------------------FAGS-

Query:  DVRPGDWYCSVGNCGAHNFASRSSCFKCGA
          R GDW C    CG HNFA    C +CGA
Subjt:  DVRPGDWYCSVGNCGAHNFASRSSCFKCGA

P32770 Asparagine-rich protein4.2e-0466.67Show/hide
Query:  RPGDWNCTSCHHLNFQRRDICQRCGDP
        RPGDWNC SC   NFQRR  C RC  P
Subjt:  RPGDWNCTSCHHLNFQRRDICQRCGDP

Q27294 RNA-binding protein cabeza6.4e-0547.17Show/hide
Query:  RPGDWNCTSCHHLNFQRRDICQRCGDPK------TGGGGGARAGSGFGFAGSD
        R GDW C SC++ NF  R+ C RC  PK      +GGGGG   G G G  G D
Subjt:  RPGDWNCTSCHHLNFQRRDICQRCGDPK------TGGGGGARAGSGFGFAGSD

Q9AST1 Transcription initiation factor TFIID subunit 156.4e-0534.38Show/hide
Query:  GDWNC--TSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFG---FAGSD---------------VRPGDWYCSVGNCGAHNFASRSSCFKCGAFK
        GDW C  TSC ++NF  R +C RCG  +  G  G   G+G G     G+D                 P DW C +  CG  N+A R  C  C   K
Subjt:  GDWNC--TSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFG---FAGSD---------------VRPGDWYCSVGNCGAHNFASRSSCFKCGAFK

Arabidopsis top hitse value%identityAlignment
AT1G50300.1 TBP-associated factor 154.6e-0634.38Show/hide
Query:  GDWNC--TSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFG---FAGSD---------------VRPGDWYCSVGNCGAHNFASRSSCFKCGAFK
        GDW C  TSC ++NF  R +C RCG  +  G  G   G+G G     G+D                 P DW C +  CG  N+A R  C  C   K
Subjt:  GDWNC--TSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFG---FAGSD---------------VRPGDWYCSVGNCGAHNFASRSSCFKCGAFK

AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein7.8e-0632.43Show/hide
Query:  RPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKC
        + GDW C +C+ LNF +   C RC D  T                  + PG+W C   +C   NF   S C KC
Subjt:  RPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein8.5e-2138.33Show/hide
Query:  GDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFA
        GDW C +C H NF++R+ CQ+CG PK GG       S + +  ++V  GDWYC   NCG+HN+ASR+SC++CG  K + +   +        G     + 
Subjt:  GDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFA

Query:  TPARSPASAWKSGDWICARV
            +    WK+GDW+C RV
Subjt:  TPARSPASAWKSGDWICARV

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein7.0e-3954.79Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGG---------GARAGSGFGF-AGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDM-------
        M+RPGDWNC SC HLNFQRRD CQRCGD ++G GG         G RA S FGF  GSDVRPGDWYC+VGNCG HNFASRS+CFKCG FKD+        
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGG---------GARAGSGFGF-AGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDM-------

Query:  -----STFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWICARV
             + FD D+ R             P     S+WKSGDWIC R+
Subjt:  -----STFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWICARV

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein5.2e-3453.19Show/hide
Query:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTG--------GGGGARAGSGFGF-AGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS-------
        MNRPGDWNC  C HLNFQRRD CQRC +P+ G        G GG    S FGF  G DVRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S       
Subjt:  MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTG--------GGGGARAGSGFGF-AGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS-------

Query:  TFDFDLPRPTPRGISPFPFATP--ARSPASAWKSGDWICAR
        T   D+     RG+  F  ++     +  S WKSGDWIC R
Subjt:  TFDFDLPRPTPRGISPFPFATP--ARSPASAWKSGDWICAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACACAGAAGATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACTTGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGG
CGGCGGCGCAAGAGCTGGGTCTGGATTCGGGTTCGCCGGGTCGGACGTCAGGCCCGGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGT
CAAGCTGCTTCAAATGTGGGGCCTTCAAAGACGACATGTCGACCTTCGACTTCGACCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTCCTTTCGCTACTCCCGCC
CGTTCCCCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ACACAGAAGATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACTTGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGG
CGGCGGCGCAAGAGCTGGGTCTGGATTCGGGTTCGCCGGGTCGGACGTCAGGCCCGGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGT
CAAGCTGCTTCAAATGTGGGGCCTTCAAAGACGACATGTCGACCTTCGACTTCGACCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTCCTTTCGCTACTCCCGCC
CGTTCCCCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGGTTTAGGGTTCCAAGTGAGAAAATTTCAAAGAGACTTCATTCATAAACTGCACTATCTTTCT
TTCTTCT
Protein sequenceShow/hide protein sequence
TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPA
RSPASAWKSGDWICARV