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Carg06516 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06516
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionribonuclease 3-like protein 1 isoform X1
Genome locationCarg_Chr14:10466400..10466815
RNA-Seq ExpressionCarg06516
SyntenyCarg06516
Gene Ontology termsGO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581945.1 Endoribonuclease Dicer-like 4, partial [Cucurbita argyrosperma subsp. sororia]1.5e-14100Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

KAG7018365.1 hypothetical protein SDJN02_20233, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-28100Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVFLVAGSFIKNCSWGHHPVLL
        MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVFLVAGSFIKNCSWGHHPVLL
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVFLVAGSFIKNCSWGHHPVLL

XP_022956286.1 ribonuclease 3-like protein 1 isoform X1 [Cucurbita moschata]2.0e-1497.44Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

XP_022956288.1 ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata]2.0e-1497.44Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

XP_023528856.1 endoribonuclease Dicer homolog 4-like [Cucurbita pepo subsp. pepo]2.0e-1497.44Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

TrEMBL top hitse value%identityAlignment
A0A6J1GVX2 ribonuclease 3-like protein 1 isoform X29.8e-1597.44Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

A0A6J1GW48 ribonuclease 3-like protein 1 isoform X19.8e-1597.44Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

A0A6J1GWD5 ribonuclease 3-like protein 1 isoform X39.8e-1597.44Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKGDCGEDLECYGKPQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

A0A6J1IQF2 ribonuclease 3-like protein 1 isoform X13.1e-1392.31Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKG CGEDLECYG PQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

A0A6J1IY75 ribonuclease 3-like protein 1 isoform X23.1e-1392.31Show/hide
Query:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        MKG CGEDLECYG PQTRKK+AAEDAAEGAVWYLKHLGY
Subjt:  MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

SwissProt top hitse value%identityAlignment
P84634 Dicer-like protein 47.5e-0456.25Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGYV
        LECYG+ +  KK AAE AA+ A+W LKH G++
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGYV

Q9M8N2 Ribonuclease 3-like protein 12.3e-0565.52Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHL
        LEC+G P+ +KK AAE AAEGA+WYL+H+
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHL

Arabidopsis top hitse value%identityAlignment
AT1G80650.1 RNAse THREE-like protein 11.6e-0665.52Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHL
        LEC+G P+ +KK AAE AAEGA+WYL+H+
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHL

AT4G00420.1 Double-stranded RNA-binding domain (DsRBD)-containing protein5.1e-0870.97Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        LEC+G PQ +KKIAAE AAE A+WYLK++GY
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

AT4G00420.2 Double-stranded RNA-binding domain (DsRBD)-containing protein5.1e-0870.97Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        LEC+G PQ +KKIAAE AAE A+WYLK++GY
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

AT4G00420.3 Double-stranded RNA-binding domain (DsRBD)-containing protein5.1e-0870.97Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY
        LEC+G PQ +KKIAAE AAE A+WYLK++GY
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGY

AT5G20320.1 dicer-like 45.3e-0556.25Show/hide
Query:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGYV
        LECYG+ +  KK AAE AA+ A+W LKH G++
Subjt:  LECYGKPQTRKKIAAEDAAEGAVWYLKHLGYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGAGATTGTGGAGAAGATTTGGAATGCTATGGAAAACCTCAAACAAGAAAGAAAATAGCAGCAGAGGATGCGGCAGAAGGAGCAGTATGGTATTTAAAGCATTT
GGGGTATGTTTTCCTTGTGGCTGGATCGTTCATTAAGAATTGCTCTTGGGGTCACCACCCTGTACTACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGAGATTGTGGAGAAGATTTGGAATGCTATGGAAAACCTCAAACAAGAAAGAAAATAGCAGCAGAGGATGCGGCAGAAGGAGCAGTATGGTATTTAAAGCATTT
GGGGTATGTTTTCCTTGTGGCTGGATCGTTCATTAAGAATTGCTCTTGGGGTCACCACCCTGTACTACTATGA
Protein sequenceShow/hide protein sequence
MKGDCGEDLECYGKPQTRKKIAAEDAAEGAVWYLKHLGYVFLVAGSFIKNCSWGHHPVLL