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Carg06517 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06517
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionribonuclease 3-like protein 1 isoform X1
Genome locationCarg_Chr14:10467262..10468835
RNA-Seq ExpressionCarg06517
SyntenyCarg06517
Gene Ontology termsGO:0030422 - production of siRNA involved in RNA interference (biological process)
GO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581945.1 Endoribonuclease Dicer-like 4, partial [Cucurbita argyrosperma subsp. sororia]3.1e-9297.09Show/hide
Query:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
        ++ TVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
Subjt:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS

Query:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        PNARTTPEERKENFGDSASRSSGCSHDSTKE  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

KAG7018366.1 Endoribonuclease Dicer-like 4 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-96100Show/hide
Query:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
        MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
Subjt:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS

Query:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

XP_022956286.1 ribonuclease 3-like protein 1 isoform X1 [Cucurbita moschata]4.0e-9297.09Show/hide
Query:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
        MFQTVHYREIVGEE KNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARS
Subjt:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS

Query:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        PNARTTP+ERKENFGDSASRSSGCSHDSTKE  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

XP_022956287.1 ribonuclease 3-like protein 1 isoform X2 [Cucurbita moschata]2.9e-9095.35Show/hide
Query:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
        MFQTVHYREIVGEE KNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARS
Subjt:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS

Query:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        PNARTTP+ERKENFGDSASRSSGCSHDSTKE     VKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

XP_022956288.1 ribonuclease 3-like protein 1 isoform X3 [Cucurbita moschata]2.7e-8097.35Show/hide
Query:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS
        MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARSPNARTTP+ERKENFGDSASRS
Subjt:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS

Query:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        SGCSHDSTKE  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

TrEMBL top hitse value%identityAlignment
A0A6J1GVX2 ribonuclease 3-like protein 1 isoform X21.4e-9095.35Show/hide
Query:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
        MFQTVHYREIVGEE KNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARS
Subjt:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS

Query:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        PNARTTP+ERKENFGDSASRSSGCSHDSTKE     VKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

A0A6J1GW48 ribonuclease 3-like protein 1 isoform X12.0e-9297.09Show/hide
Query:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS
        MFQTVHYREIVGEE KNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARS
Subjt:  MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARS

Query:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        PNARTTP+ERKENFGDSASRSSGCSHDSTKE  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  PNARTTPEERKENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

A0A6J1GWD5 ribonuclease 3-like protein 1 isoform X31.3e-8097.35Show/hide
Query:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS
        MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDGVPMNPACFDSARSPNARTTP+ERKENFGDSASRS
Subjt:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS

Query:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        SGCSHDSTKE  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
Subjt:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

A0A6J1IQF2 ribonuclease 3-like protein 1 isoform X15.7e-7693.38Show/hide
Query:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS
        MENTPSCPRSVNVNLKNLPPIHNPC G ANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDG+PM PACFDSARSPNARTTPEERKENFGDSA RS
Subjt:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS

Query:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        SG SHDSTKE  GTSVKKSAKSLLYEICT NHWKPPLFECCEEEGPSHAKK
Subjt:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

A0A6J1IY75 ribonuclease 3-like protein 1 isoform X24.1e-7491.39Show/hide
Query:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS
        MENTPSCPRSVNVNLKNLPPIHNPC G ANHSSIPAKFEKSRYIGRVPQFMPPNHSPD+RPNEYDG+PM PACFDSARSPNARTTPEERKENFGDSA RS
Subjt:  MENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEERKENFGDSASRS

Query:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        SG SHDSTKE     VKKSAKSLLYEICT NHWKPPLFECCEEEGPSHAKK
Subjt:  SGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

SwissProt top hitse value%identityAlignment
A7LFZ6 Endoribonuclease Dicer homolog 44.9e-0858.97Show/hide
Query:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK
        G  V K+A+S L+E+C AN+WKPP F+ C+EEGPSH +K
Subjt:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK

P84634 Dicer-like protein 41.7e-0868.42Show/hide
Query:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        G    K+AKSLL+E C AN WKPP FECCEEEGP H K
Subjt:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK

Q9M8N2 Ribonuclease 3-like protein 13.9e-0539.53Show/hide
Query:  TKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        +K+    + + SAKS+L+E+C +  W+PP++ECC  +GP H +
Subjt:  TKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK

Arabidopsis top hitse value%identityAlignment
AT1G80650.1 RNAse THREE-like protein 12.8e-0639.53Show/hide
Query:  TKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        +K+    + + SAKS+L+E+C +  W+PP++ECC  +GP H +
Subjt:  TKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK

AT4G00420.1 Double-stranded RNA-binding domain (DsRBD)-containing protein4.4e-0445.45Show/hide
Query:  STKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        +T+  T  + + SAKS LY +C+  HWK PL+E    EGP H K
Subjt:  STKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK

AT4G00420.2 Double-stranded RNA-binding domain (DsRBD)-containing protein9.8e-0452.94Show/hide
Query:  KKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        + SAKS LY +C+  HWK PL+E    EGP H K
Subjt:  KKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK

AT5G20320.1 dicer-like 41.2e-0968.42Show/hide
Query:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        G    K+AKSLL+E C AN WKPP FECCEEEGP H K
Subjt:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK

AT5G20320.2 dicer-like 41.2e-0968.42Show/hide
Query:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK
        G    K+AKSLL+E C AN WKPP FECCEEEGP H K
Subjt:  GTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCAGACAGTACACTACAGAGAGATCGTCGGAGAAGAGCCGAAGAATCGAGAAAATCAGATGGAGAACACTCCTTCCTGTCCTCGAAGTGTGAATGTCAATCTCAA
AAATCTTCCTCCAATTCATAATCCGTGTGTTGGAAATGCAAATCACTCCTCGATTCCGGCTAAATTTGAGAAATCGAGGTATATTGGGCGCGTTCCTCAGTTTATGCCAC
CTAATCACTCGCCGGATATAAGGCCGAACGAATATGATGGCGTGCCGATGAACCCGGCGTGTTTTGATTCTGCTCGTTCTCCTAATGCAAGGACGACTCCGGAGGAAAGG
AAAGAGAATTTCGGGGATTCAGCTTCGAGGTCCAGTGGTTGCAGTCATGACTCGACCAAAGAAGGTACCGGTACTTCAGTAAAGAAATCGGCGAAGTCCCTTCTGTATGA
GATATGCACTGCAAATCACTGGAAGCCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGTCCAAGCCACGCAAAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTGCTCTGTGAAATTGATGTTTCAGACAGTACACTACAGAGAGATCGTCGGAGAAGAGCCGAAGAATCGAGAAAATCAGATGGAGAACACTCCTTCCTGTCCTCGAA
GTGTGAATGTCAATCTCAAAAATCTTCCTCCAATTCATAATCCGTGTGTTGGAAATGCAAATCACTCCTCGATTCCGGCTAAATTTGAGAAATCGAGGTATATTGGGCGC
GTTCCTCAGTTTATGCCACCTAATCACTCGCCGGATATAAGGCCGAACGAATATGATGGCGTGCCGATGAACCCGGCGTGTTTTGATTCTGCTCGTTCTCCTAATGCAAG
GACGACTCCGGAGGAAAGGAAAGAGAATTTCGGGGATTCAGCTTCGAGGTCCAGTGGTTGCAGTCATGACTCGACCAAAGAAGGTACCGGTACTTCAGTAAAGAAATCGG
CGAAGTCCCTTCTGTATGAGATATGCACTGCAAATCACTGGAAGCCTCCTCTGTTTGAATGCTGCGAGGAAGAAGGTCCAAGCCACGCAAAAAAGTAA
Protein sequenceShow/hide protein sequence
MFQTVHYREIVGEEPKNRENQMENTPSCPRSVNVNLKNLPPIHNPCVGNANHSSIPAKFEKSRYIGRVPQFMPPNHSPDIRPNEYDGVPMNPACFDSARSPNARTTPEER
KENFGDSASRSSGCSHDSTKEGTGTSVKKSAKSLLYEICTANHWKPPLFECCEEEGPSHAKK