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Carg06570 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06570
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 23-like
Genome locationCarg_Chr14:10779290..10779481
RNA-Seq ExpressionCarg06570
SyntenyCarg06570
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581996.1 hypothetical protein SDJN03_21998, partial [Cucurbita argyrosperma subsp. sororia]4.1e-1898.36Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYV
        MEMKNIACA LFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYV
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYV
KAG7018419.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-20100Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
XP_022980143.1 arabinogalactan peptide 23-like [Cucurbita maxima]2.4e-1895.24Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMKNIAC  LF AAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
XP_023004714.1 arabinogalactan peptide 23-like [Cucurbita maxima]1.1e-1588.89Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IACA LFAAA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY  N
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
XP_023528634.1 arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]5.4e-1896.83Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMKNIACA LFAAAAVTAVVASDES SPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
TrEMBL top hitse value%identityAlignment
A0A1S3CDX5 arabinogalactan peptide 23-like5.8e-1078.12Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFV-AYVLN
        MEMK IACA LFAAAAV+A VA+DES SPAAAPGPSSAASAALP L    GAS+VSFV AY LN
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFV-AYVLN
A0A6J1F3F5 arabinogalactan peptide 23-like7.8e-1585.71Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IACA LFAAA VTAVVASDES SPAAAPGPSSAASA LPALGSL+GASLVS VAY  N
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
A0A6J1H8I1 arabinogalactan peptide 23-like3.5e-1585.71Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IACA LFAAA +TAVVASDES SPAAAPGPSSAASAALPALGSL+GASLVSFVA+  N
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
A0A6J1IYE9 arabinogalactan peptide 23-like1.2e-1895.24Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMKNIAC  LF AAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
A0A6J1KX42 arabinogalactan peptide 23-like5.4e-1688.89Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IACA LFAAA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY  N
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 234.6e-1269.84Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IAC VLFAAA++TAV+A++E  +P  APGP+SAASAALPALGSL+GASLVS  +Y L+
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)7.5e-1064.06Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGP-SSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IAC V+FAAA++TAV+A++     A APGP +S AS A+PALGSL+GASLVS  AY LN
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGP-SSAASAALPALGSLIGASLVSFVAYVLN
AT3G20865.1 arabinogalactan protein 403.6e-0446.77Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVL
        MEMKNI  A LF +A + + V++    SPA +PG SSA++ A P +GS++ ASL +F+A +L
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVL
AT3G57690.1 arabinogalactan protein 233.3e-1369.84Show/hide
Query:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN
        MEMK IAC VLFAAA++TAV+A++E  +P  APGP+SAASAALPALGSL+GASLVS  +Y L+
Subjt:  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAACATTGCCTGCGCTGTCCTCTTCGCCGCCGCTGCAGTCACTGCAGTCGTGGCCTCCGATGAGTCTCACTCTCCCGCTGCCGCTCCTGGGCCGAGCAG
CGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTTATCGGTGCGTCGCTTGTTTCCTTCGTCGCCTACGTATTGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAACATTGCCTGCGCTGTCCTCTTCGCCGCCGCTGCAGTCACTGCAGTCGTGGCCTCCGATGAGTCTCACTCTCCCGCTGCCGCTCCTGGGCCGAGCAG
CGCCGCCTCCGCCGCTCTTCCCGCCCTTGGATCGCTTATCGGTGCGTCGCTTGTTTCCTTCGTCGCCTACGTATTGAACTGA
Protein sequenceShow/hide protein sequence
MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAYVLN