; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06577 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06577
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr14:10825555..10827208
RNA-Seq ExpressionCarg06577
SyntenyCarg06577
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044190 - Protein THYLAKOID ASSEMBLY 8-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582003.1 hypothetical protein SDJN03_22005, partial [Cucurbita argyrosperma subsp. sororia]5.7e-129100Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN
        LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN

XP_022955796.1 pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita moschata]2.4e-12798.74Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPD ICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFMRNEEWYEPDL+LYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN
        LIKNLERFREEFAAVVKKECAEFLDSPEKFLRG LNRN
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN

XP_022980054.1 pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita maxima]4.0e-12297.41Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLH PQLGFRQNLTNPTLHCCTAGPPP+IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFMRNEEWYEPDL+LYHVMIQMMGKNKMIEMAEEVFH+ KRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGC PDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLR
        LIKNLERFREEFAAVVKKECAEFLDSPEKFLR
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLR

XP_023527118.1 pentatricopeptide repeat-containing protein At1g62350-like [Cucurbita pepo subsp. pepo]5.5e-12498.71Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPP+IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFMRNEEWYEPDL+LYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAY+QVDMVERAVETYELMKASGCIPDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLR
        LIKNLERFREEFAAVVKKECAEFLDSPEKFLR
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLR

XP_038878176.1 pentatricopeptide repeat-containing protein At1g62350-like [Benincasa hispida]5.0e-10987.88Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMG LQ HFPQLG RQ+LTNP+LHCCTA PPP+IICGLRKG RKPLG+SRVPS E+IQAVQSLKLAKS SKMEDVINSKLSRLLKADLFDAL ELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKF++NEEWYEPDL LYH MI M GKNKMIEMAEE+FH+LK+DGLEPD RAFNEMMGAYLQVDMVERAVETYELMKASGC PDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFL
        LIKNLE+FREEFAAVVKKEC  +LDSPEKFL
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFL

TrEMBL top hitse value%identityAlignment
A0A1S3BX97 pentatricopeptide repeat-containing protein At1g62350-like2.5e-10684.35Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFP+LG RQNLTN +LHCCTA PPP+IICGLRKG +KPLG+SRVPS E+IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDAL ELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFM+NEEWYEPDL LYH MI MMGKNKMIEMAEEVFH+L++DGLEPDTRAFNEMMGAYLQVDM+ERA +TY LM ASGC PDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKF
        LIKNLE+F+EEFA VVKK+C E+LD+P+KF
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKF

A0A5A7TQZ8 Pentatricopeptide repeat-containing protein1.1e-10684.78Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFPQLG RQNLTN +LHCCTA PPP+IICGLRKG +KPLG+SRVPS E+IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDAL ELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFM+NEEWYEPDL LYH MI MMGKNKMIEMAEEVFH+L++DGLEPDTRAFNEMMGAYLQVDM+ERA +TY LM ASGC PDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKF
        LIKNLE+F+EEFA VVKK+C E+LD+P+KF
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKF

A0A5D3CZ95 Pentatricopeptide repeat-containing protein2.5e-10684.35Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFP+LG RQNLTN +LHCCTA PPP+IICGLRKG +KPLG+SRVPS E+IQAVQSLKLAK  SKMEDVIN+KLSRLLKADLFDAL ELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFM+NEEWYEPDL LYH MI MMGKNKMIEMAEEVFH+L++DGLEPDTRAFNEMMGAYLQVDM+ERA +TY LM ASGC PDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKF
        LIKNLE+F+EEFA VVKK+C E+LD+P+KF
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKF

A0A6J1GUU8 pentatricopeptide repeat-containing protein At1g62350-like1.2e-12798.74Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPD ICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFMRNEEWYEPDL+LYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN
        LIKNLERFREEFAAVVKKECAEFLDSPEKFLRG LNRN
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLRGTLNRN

A0A6J1IY98 pentatricopeptide repeat-containing protein At1g62350-like1.9e-12297.41Show/hide
Query:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
        MKSTLMGRLQLH PQLGFRQNLTNPTLHCCTAGPPP+IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ
Subjt:  MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQ

Query:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI
        RQNELELSLQVFKFMRNEEWYEPDL+LYHVMIQMMGKNKMIEMAEEVFH+ KRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGC PDKLTFKI
Subjt:  RQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKI

Query:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLR
        LIKNLERFREEFAAVVKKECAEFLDSPEKFLR
Subjt:  LIKNLERFREEFAAVVKKECAEFLDSPEKFLR

SwissProt top hitse value%identityAlignment
Q1PFH7 Pentatricopeptide repeat-containing protein At1g623501.6e-1732.26Show/hide
Query:  STESIQAVQSLKLAKSAS-KMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDG
        S E + A + LK  ++ S +++  I S +SRLLK+DL   LAE QRQN++ L +++++ +R E WY PD+  Y  M+ M+ +NK ++  ++V+ +LK++ 
Subjt:  STESIQAVQSLKLAKSAS-KMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDG

Query:  LEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFRE
        +  D   F +++  +L  ++   A+  Y  M+ S   P  L F++++K L  + E
Subjt:  LEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFRE

Q9FKC3 Pentatricopeptide repeat-containing protein At5g48730, chloroplastic9.5e-1030.71Show/hide
Query:  SLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNE
        S+ L + A+K          +LL   + ++L E       E ++QVF+ +R + WY+P++ +Y  +I M+GK K  E A E+F E+  +G   +   +  
Subjt:  SLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNE

Query:  MMGAYLQVDMVERAVETYELMKAS-GCIPDKLTFKILIKN
        ++ AY +    + A    E MK+S  C PD  T+ ILIK+
Subjt:  MMGAYLQVDMVERAVETYELMKAS-GCIPDKLTFKILIKN

Q9LVW6 Protein THYLAKOID ASSEMBLY 8, chloroplastic1.7e-1132.96Show/hide
Query:  IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEP-DLSLYHVMIQMMG
        I CG R   R PL K R+ STE+IQ++QSLK A        +    L RL+K+DL   L EL RQ+   L++ V   +R E  Y P DL LY  ++  + 
Subjt:  IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEP-DLSLYHVMIQMMG

Query:  KNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASG-----CIPDKLTFKILIKNLERFRE
        +NK  +  + +  E+       D +A  +++ A +  +  E  V  Y LM+ SG        D+   ++L K L R  E
Subjt:  KNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASG-----CIPDKLTFKILIKNLERFRE

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic4.0e-1629.81Show/hide
Query:  RKPLGK-SRVPSTESIQAVQSLK-LAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMA
        R PL +  ++   E++  +  LK L +   K++  I + + RLLK D+   + EL+RQ E  L++++F+ ++ +EWY+PD+ +Y  +I  + K+K ++ A
Subjt:  RKPLGK-SRVPSTESIQAVQSLK-LAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMA

Query:  EEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNL
          ++ ++K++ L PD++ + E++  +L+      A+  YE M  S   P++L F++L+K L
Subjt:  EEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNL

Q9ZU27 Pentatricopeptide repeat-containing protein At1g51965, mitochondrial6.2e-0925.25Show/hide
Query:  FPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFD---ALAELQRQNELELSL
        FP  G R +  +     C AG   + I  L K   K +    +       A+  L   K  S + D+           D+F     +A   R  E++ ++
Subjt:  FPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFD---ALAELQRQNELELSL

Query:  QVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLER
         +F+ +   +  +PD+  Y+ +I  +GKN  ++ A   F E++  GL PD   ++ +M  + + + VE A   +E M   GC P+ +T+ IL+  LE+
Subjt:  QVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLER

Arabidopsis top hitse value%identityAlignment
AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-1832.26Show/hide
Query:  STESIQAVQSLKLAKSAS-KMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDG
        S E + A + LK  ++ S +++  I S +SRLLK+DL   LAE QRQN++ L +++++ +R E WY PD+  Y  M+ M+ +NK ++  ++V+ +LK++ 
Subjt:  STESIQAVQSLKLAKSAS-KMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDG

Query:  LEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFRE
        +  D   F +++  +L  ++   A+  Y  M+ S   P  L F++++K L  + E
Subjt:  LEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFRE

AT3G27750.1 FUNCTIONS IN: molecular_function unknown1.2e-1232.96Show/hide
Query:  IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEP-DLSLYHVMIQMMG
        I CG R   R PL K R+ STE+IQ++QSLK A        +    L RL+K+DL   L EL RQ+   L++ V   +R E  Y P DL LY  ++  + 
Subjt:  IICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEP-DLSLYHVMIQMMG

Query:  KNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASG-----CIPDKLTFKILIKNLERFRE
        +NK  +  + +  E+       D +A  +++ A +  +  E  V  Y LM+ SG        D+   ++L K L R  E
Subjt:  KNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASG-----CIPDKLTFKILIKNLERFRE

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-1729.81Show/hide
Query:  RKPLGK-SRVPSTESIQAVQSLK-LAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMA
        R PL +  ++   E++  +  LK L +   K++  I + + RLLK D+   + EL+RQ E  L++++F+ ++ +EWY+PD+ +Y  +I  + K+K ++ A
Subjt:  RKPLGK-SRVPSTESIQAVQSLK-LAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMA

Query:  EEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNL
          ++ ++K++ L PD++ + E++  +L+      A+  YE M  S   P++L F++L+K L
Subjt:  EEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNL

AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain1.0e-2233.18Show/hide
Query:  RKGQRKPLGKSRVPSTESIQAVQSLKLA----------------KSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLS
        R   RKPL + R+ S E+IQAVQ+LK A                 S++ ++ VI SK  RLLK D+   L EL RQNE  L+L+VF+ +R E WY+P + 
Subjt:  RKGQRKPLGKSRVPSTESIQAVQSLKLA----------------KSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLS

Query:  LYHVMIQMMGKNKMIEMAEEVFHELKRD-GLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFRE-EFAAVVKK------
        +Y  MI +M  N ++E    ++  +K + GL  +   FN ++   L   + +  ++ Y  M++ G  PD+ +F++L+  LE   E   +A+V++      
Subjt:  LYHVMIQMMGKNKMIEMAEEVFHELKRD-GLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFRE-EFAAVVKK------

Query:  -ECAEFLDSPEKFLRGT
         E  EF++  E+   GT
Subjt:  -ECAEFLDSPEKFLRGT

AT5G48730.1 Pentatricopeptide repeat (PPR) superfamily protein6.7e-1130.71Show/hide
Query:  SLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNE
        S+ L + A+K          +LL   + ++L E       E ++QVF+ +R + WY+P++ +Y  +I M+GK K  E A E+F E+  +G   +   +  
Subjt:  SLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQVFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNE

Query:  MMGAYLQVDMVERAVETYELMKAS-GCIPDKLTFKILIKN
        ++ AY +    + A    E MK+S  C PD  T+ ILIK+
Subjt:  MMGAYLQVDMVERAVETYELMKAS-GCIPDKLTFKILIKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTACGCTAATGGGTCGTCTTCAACTCCATTTCCCTCAATTGGGTTTCCGCCAAAACCTCACAAATCCAACCCTCCATTGTTGTACGGCAGGTCCACCTCCAGA
TATCATCTGTGGCCTCAGAAAGGGTCAGAGGAAGCCCTTAGGGAAGTCAAGGGTGCCCTCCACTGAGTCTATTCAAGCAGTTCAATCGCTCAAGCTCGCTAAATCCGCCT
CCAAAATGGAGGACGTAATCAATAGCAAGCTTAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGGCTGAATTACAGAGGCAAAATGAACTGGAACTATCGCTTCAG
GTCTTCAAATTCATGCGGAATGAAGAGTGGTACGAGCCAGATTTAAGCCTGTACCATGTGATGATTCAAATGATGGGGAAGAACAAAATGATTGAAATGGCTGAAGAGGT
CTTCCATGAGTTAAAAAGGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTAGACATGGTGGAAAGAGCTGTTGAGACATATG
AATTAATGAAAGCATCAGGTTGTATTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTTGAGAGATTTAGGGAAGAGTTTGCTGCAGTGGTCAAGAAAGAATGT
GCTGAGTTCTTGGATTCTCCTGAGAAGTTCCTCAGAGGGACGTTGAACAGAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTACGCTAATGGGTCGTCTTCAACTCCATTTCCCTCAATTGGGTTTCCGCCAAAACCTCACAAATCCAACCCTCCATTGTTGTACGGCAGGTCCACCTCCAGA
TATCATCTGTGGCCTCAGAAAGGGTCAGAGGAAGCCCTTAGGGAAGTCAAGGGTGCCCTCCACTGAGTCTATTCAAGCAGTTCAATCGCTCAAGCTCGCTAAATCCGCCT
CCAAAATGGAGGACGTAATCAATAGCAAGCTTAGCAGATTGCTGAAAGCAGACTTGTTTGATGCTCTGGCTGAATTACAGAGGCAAAATGAACTGGAACTATCGCTTCAG
GTCTTCAAATTCATGCGGAATGAAGAGTGGTACGAGCCAGATTTAAGCCTGTACCATGTGATGATTCAAATGATGGGGAAGAACAAAATGATTGAAATGGCTGAAGAGGT
CTTCCATGAGTTAAAAAGGGATGGGTTAGAACCAGACACAAGAGCTTTTAATGAGATGATGGGAGCATATTTGCAAGTAGACATGGTGGAAAGAGCTGTTGAGACATATG
AATTAATGAAAGCATCAGGTTGTATTCCAGATAAACTGACTTTCAAGATTTTGATCAAGAATCTTGAGAGATTTAGGGAAGAGTTTGCTGCAGTGGTCAAGAAAGAATGT
GCTGAGTTCTTGGATTCTCCTGAGAAGTTCCTCAGAGGGACGTTGAACAGAAACTGA
Protein sequenceShow/hide protein sequence
MKSTLMGRLQLHFPQLGFRQNLTNPTLHCCTAGPPPDIICGLRKGQRKPLGKSRVPSTESIQAVQSLKLAKSASKMEDVINSKLSRLLKADLFDALAELQRQNELELSLQ
VFKFMRNEEWYEPDLSLYHVMIQMMGKNKMIEMAEEVFHELKRDGLEPDTRAFNEMMGAYLQVDMVERAVETYELMKASGCIPDKLTFKILIKNLERFREEFAAVVKKEC
AEFLDSPEKFLRGTLNRN