; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06609 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06609
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNuclear transport factor 2
Genome locationCarg_Chr14:10976384..10976934
RNA-Seq ExpressionCarg06609
SyntenyCarg06609
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582032.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4898.99Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSM TFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

KAG7018458.1 Nuclear transport factor 2 [Cucurbita argyrosperma subsp. argyrosperma]3.3e-55100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQC
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQC
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQC

Query:  SLGVSRSISVI
        SLGVSRSISVI
Subjt:  SLGVSRSISVI

XP_022956152.1 nuclear transport factor 2B [Cucurbita moschata]6.1e-49100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

XP_022979987.1 nuclear transport factor 2B [Cucurbita maxima]2.3e-4898.99Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

XP_023526029.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]6.1e-49100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

TrEMBL top hitse value%identityAlignment
A0A0A0KW20 NTF2 domain-containing protein1.4e-4694.95Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRA L NLYQD SMLTFEGQKIQGSPNIVAKL+SLPFQQC+HSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

A0A438DXC4 Nuclear transport factor 2A1.8e-4691.18Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQC
        MDPDAVAKAFV+HYYSTFDANRA LANLYQ++SMLTFEGQKIQGSPNIVAKLTSLPFQQCQHS++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ 
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQC

Query:  SL
        +L
Subjt:  SL

A0A6J1F2G7 nuclear transport factor 2B-like1.8e-4694.95Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQGS NIVAKLTSLPFQQCQHSVSTVDCQPSGP+GG+LVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

A0A6J1GVJ2 nuclear transport factor 2B2.9e-49100Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

A0A6J1IQ79 nuclear transport factor 2B1.1e-4898.99Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

SwissProt top hitse value%identityAlignment
Q75AA5 Nuclear transport factor 23.5e-2350.51Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MD  A+A+ F + YY+ FD +R+ L NLY+D SMLTFE  ++QG+ +IV KL SLPFQ+ QH ++T+D QP+ P G +LV ++G+L +  EQ+A +FSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

Q96VN3 Nuclear transport factor 21.2e-2356.12Show/hide
Query:  DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        D  ++A+ FV  YY TFD NRAGLA LY+D SMLTFE   IQG   I+ KLTSLPFQ+ QH VST+D QPSG  GG+LV V+G L +  E++ + ++Q
Subjt:  DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

Q9C7F5 Nuclear transport factor 2B2.3e-4383.84Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG  +IVAKLTSLPFQQC+H +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

Q9FZK4 Nuclear transport factor 2A3.2e-4586.87Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKLT LPFQQC+H+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

Q9XJ54 Nuclear transport factor 22.2e-3367.68Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  G+  I  KL SLPF QC H ++TVDCQPSGP GGMLVFVSG+L+   ++H LKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like7.0e-2758.82Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQC
        + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ 
Subjt:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQC

Query:  SL
         L
Subjt:  SL

AT1G11570.2 NTF2-like9.1e-2759.6Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQ
        + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H +STVD QPS   G  GG+LVFVSG++QL GE H L+FSQ
Subjt:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPS---GPTGGMLVFVSGNLQLAGEQHALKFSQ

AT1G27310.1 nuclear transport factor 2A2.3e-4686.87Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQGS NIVAKLT LPFQQC+H+++TVDCQPSGP GGMLVFVSGNLQLAGEQHALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

AT1G27970.1 nuclear transport factor 2B1.7e-4483.84Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG  +IVAKLTSLPFQQC+H +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ

AT1G27970.2 nuclear transport factor 2B1.7e-4483.84Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG  +IVAKLTSLPFQQC+H +STVDCQPSGP  GMLVFVSGNLQLAGE+HALKFSQ
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCATTATTACTCTACCTTTGACGCCAATCGAGCTGGTCTTGCTAATCTCTACCAGGACACTTCTATGTTGACGTT
TGAAGGTCAGAAGATCCAAGGCTCGCCGAATATTGTCGCCAAGCTTACTAGCCTTCCCTTCCAGCAGTGCCAGCACTCCGTTAGCACTGTCGATTGCCAGCCTTCCGGCC
CCACTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGTGAACAACATGCTCTCAAATTCAGTCAGTGTTCTCTTGGAGTTAGCCGATCGATCAGTGTT
ATTTAG
mRNA sequenceShow/hide mRNA sequence
CCTCGGCTAACGCTGTCGTCTCCATTTCCTTCTCTGCGAAACTCGGCGTCGTTCCCAAGCGGGGCGGAAGAAAGTGGGTTTTTGTTATCTCTTTCCCAGCGGCGGATTTC
AACTTTATCGGAATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCATTATTACTCTACCTTTGACGCCAATCGAGCTGGTCTTGCTAATCTCTACCAGGACACTTC
TATGTTGACGTTTGAAGGTCAGAAGATCCAAGGCTCGCCGAATATTGTCGCCAAGCTTACTAGCCTTCCCTTCCAGCAGTGCCAGCACTCCGTTAGCACTGTCGATTGCC
AGCCTTCCGGCCCCACTGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCTGGTGAACAACATGCTCTCAAATTCAGTCAGTGTTCTCTTGGAGTTAGCCGA
TCGATCAGTGTTATTTAG
Protein sequenceShow/hide protein sequence
MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGSPNIVAKLTSLPFQQCQHSVSTVDCQPSGPTGGMLVFVSGNLQLAGEQHALKFSQCSLGVSRSISV
I