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Carg06610 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06610
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNuclear transport factor 2B
Genome locationCarg_Chr14:10978458..10979120
RNA-Seq ExpressionCarg06610
SyntenyCarg06610
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582033.1 hypothetical protein SDJN03_22035, partial [Cucurbita argyrosperma subsp. sororia]1.1e-86100Show/hide
Query:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
        MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
Subjt:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL

Query:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
        VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
Subjt:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ

XP_022956151.1 uncharacterized protein LOC111457933 [Cucurbita moschata]2.5e-7398.72Show/hide
Query:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
        MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSG DDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
Subjt:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL

Query:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPA
        VSAMVVL VAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPA
Subjt:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPA

XP_022979951.1 uncharacterized protein LOC111479485 [Cucurbita maxima]4.4e-7895.78Show/hide
Query:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCLVSAMVVL
        MAEAAAEEMELISLAIRRLMEE NNRT SHRSSG +DLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKN+TEKEIVKEIKEV+RQNFITHCLVSAMVVL
Subjt:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCLVSAMVVL

Query:  TVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
        TVAWQVSEVSFILKLRDGLSNPFK+LARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
Subjt:  TVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ

XP_023526027.1 uncharacterized protein LOC111789626 [Cucurbita pepo subsp. pepo]2.9e-8296.53Show/hide
Query:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
        +GKENQRMAEAAAEEMELISLAIRRLMEEN NRTASHRS G DDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEV+RQNFITHCL
Subjt:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL

Query:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
        VSA VVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
Subjt:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ

XP_038895500.1 uncharacterized protein LOC120083719 [Benincasa hispida]5.4e-5269.84Show/hide
Query:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCD--DLQFLSRLLSQVESTREQGRRKHS-----QQDDKIIQ-------KNV---------TEKEIV
        MAE A EEMELISLAIRRLMEE++NRTASHRSSG D  DLQ LSRLLSQVESTRE+ R  HS     Q+D+KII+       +NV          EK IV
Subjt:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCD--DLQFLSRLLSQVESTREQGRRKHS-----QQDDKIIQ-------KNV---------TEKEIV

Query:  KEIKEVQRQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDFHLN
        KE+KEV+RQNFITHCLVSAM++LTVAWQVSEVSFILKLR+GLSNPFK+L  ILKR TTSAIQH+IEATEL     PALPHVNLP+F L+
Subjt:  KEIKEVQRQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDFHLN

TrEMBL top hitse value%identityAlignment
A0A0A0KTW6 Uncharacterized protein2.1e-4966.67Show/hide
Query:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSS------GCDDLQFLSRLLSQVESTREQGRRKHSQQDD-KIIQKN---------------VTEKEIVK
        MAEAAA EMELISLAIRRLMEEN +RT SHRSS        DD+Q LSRLLS+VESTR + R  HS+Q+D +II+ N               +  +EIVK
Subjt:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSS------GCDDLQFLSRLLSQVESTREQGRRKHSQQDD-KIIQKN---------------VTEKEIVK

Query:  EIKEVQRQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDG-LSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDF
        E+KEV++QNFITHCLVSAM++LTVAWQ+SEVSFILKLRDG LSNPFK+LA ILKR TTSAIQH+IEATEL     PALPHV LPDF
Subjt:  EIKEVQRQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDG-LSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDF

A0A1S3BXR6 uncharacterized protein LOC1034945627.8e-4964.86Show/hide
Query:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSS----GCDDLQFLSRLLSQVESTREQGRRKH--SQQDDKIIQKN---------------VTEKEIVKE
        M +AA EEMELISLAIRRLMEEN NRT SHRSS      DD+Q LS+LLS+VESTRE+ R  H   Q+D +II+ N               V  +EIVKE
Subjt:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSS----GCDDLQFLSRLLSQVESTREQGRRKH--SQQDDKIIQKN---------------VTEKEIVKE

Query:  IKEVQRQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDG-LSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDF
        +KEV++QNF+THCLVSAM++LTVAWQ+SEVSFILKLRDG LSNPFK+L  ILKR TTSAIQH+IEATEL     PA+PHV+LPDF
Subjt:  IKEVQRQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDG-LSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDF

A0A5A7TSP6 Uncharacterized protein1.3e-4664.97Show/hide
Query:  MELISLAIRRLMEENNNRTASHRSS----GCDDLQFLSRLLSQVESTREQGRRKH--SQQDDKIIQKN---------------VTEKEIVKEIKEVQRQN
        MELISLAIRRLMEEN NRT SHRSS      DD+Q LS+LLS+VESTRE+ R  H   Q+D +II+ N               V  +EIVKE+KEV++QN
Subjt:  MELISLAIRRLMEENNNRTASHRSS----GCDDLQFLSRLLSQVESTREQGRRKH--SQQDDKIIQKN---------------VTEKEIVKEIKEVQRQN

Query:  FITHCLVSAMVVLTVAWQVSEVSFILKLRDG-LSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDF
        F+THCLVSAM++LTVAWQ+SEVSFILKLRDG LSNPFK+L  ILKR TTSAIQH+IEATEL     PA+PHV+LPDF
Subjt:  FITHCLVSAMVVLTVAWQVSEVSFILKLRDG-LSNPFKNLARILKRNTTSAIQHKIEATEL-----PALPHVNLPDF

A0A6J1GVS4 uncharacterized protein LOC1114579331.2e-7398.72Show/hide
Query:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
        MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSG DDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL
Subjt:  MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCL

Query:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPA
        VSAMVVL VAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPA
Subjt:  VSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPA

A0A6J1IS75 uncharacterized protein LOC1114794852.1e-7895.78Show/hide
Query:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCLVSAMVVL
        MAEAAAEEMELISLAIRRLMEE NNRT SHRSSG +DLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKN+TEKEIVKEIKEV+RQNFITHCLVSAMVVL
Subjt:  MAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCLVSAMVVL

Query:  TVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
        TVAWQVSEVSFILKLRDGLSNPFK+LARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ
Subjt:  TVAWQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27300.1 unknown protein2.1e-1435.62Show/hide
Query:  AAEEMELISLAIRRLMEENNNRTASHRS--SGCDDLQFLSRLLSQVESTREQGR---------RKHSQQDDKIIQKNVTE---------KEIVKEIKEVQ
        ++E++E +S AI +L+ E   R AS  +     DD  FLS L+SQ+ES   +G+          K  +  D    K  +E         +EI K+IK+V+
Subjt:  AAEEMELISLAIRRLMEENNNRTASHRS--SGCDDLQFLSRLLSQVESTREQGR---------RKHSQQDDKIIQKNVTE---------KEIVKEIKEVQ

Query:  RQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARIL
        +QN ITH L+SA ++LT+ WQ+SE S I  L+D +S+P +++  +L
Subjt:  RQNFITHCLVSAMVVLTVAWQVSEVSFILKLRDGLSNPFKNLARIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAAGAAAACCAGAGGATGGCGGAAGCGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGGTTGATGGAAGAGAACAACAACAGAACCGCCTCTCA
CCGGAGCTCCGGCTGCGACGATCTGCAATTCCTCTCCCGATTACTCTCTCAGGTGGAATCAACCAGAGAACAGGGGCGGCGCAAGCACTCCCAACAGGATGATAAAATAA
TTCAGAAAAACGTAACAGAGAAGGAGATAGTGAAAGAGATAAAAGAAGTGCAGAGGCAGAATTTCATAACTCACTGCCTTGTTTCCGCCATGGTTGTCCTCACCGTTGCT
TGGCAAGTTTCTGAGGTGTCCTTTATTTTGAAGCTCAGAGATGGGTTGAGTAACCCATTCAAGAACCTGGCTAGAATTCTGAAAAGAAACACAACTTCAGCAATACAACA
TAAGATTGAAGCTACCGAATTGCCTGCCTTACCTCATGTGAACCTACCAGATTTTCACTTGAATGACCACAAAATCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAAGAAAACCAGAGGATGGCGGAAGCGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGGTTGATGGAAGAGAACAACAACAGAACCGCCTCTCA
CCGGAGCTCCGGCTGCGACGATCTGCAATTCCTCTCCCGATTACTCTCTCAGGTGGAATCAACCAGAGAACAGGGGCGGCGCAAGCACTCCCAACAGGATGATAAAATAA
TTCAGAAAAACGTAACAGAGAAGGAGATAGTGAAAGAGATAAAAGAAGTGCAGAGGCAGAATTTCATAACTCACTGCCTTGTTTCCGCCATGGTTGTCCTCACCGTTGCT
TGGCAAGTTTCTGAGGTGTCCTTTATTTTGAAGCTCAGAGATGGGTTGAGTAACCCATTCAAGAACCTGGCTAGAATTCTGAAAAGAAACACAACTTCAGCAATACAACA
TAAGATTGAAGCTACCGAATTGCCTGCCTTACCTCATGTGAACCTACCAGATTTTCACTTGAATGACCACAAAATCCAGTAG
Protein sequenceShow/hide protein sequence
MGKENQRMAEAAAEEMELISLAIRRLMEENNNRTASHRSSGCDDLQFLSRLLSQVESTREQGRRKHSQQDDKIIQKNVTEKEIVKEIKEVQRQNFITHCLVSAMVVLTVA
WQVSEVSFILKLRDGLSNPFKNLARILKRNTTSAIQHKIEATELPALPHVNLPDFHLNDHKIQ