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Carg06658 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06658
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationCarg_Chr18:502367..503920
RNA-Seq ExpressionCarg06658
SyntenyCarg06658
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031913.1 putative DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide [Cucumis melo var. makuwa]2.0e-1888.68Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRL-SFEGKP
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +FE  P
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRL-SFEGKP

KAG7012179.1 DNA-directed RNA polymerases II, IV and V subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-42100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGKPKRENLKRTIFASSGSGSLQMVSKPDSGRCASLLAVP
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGKPKRENLKRTIFASSGSGSLQMVSKPDSGRCASLLAVP
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGKPKRENLKRTIFASSGSGSLQMVSKPDSGRCASLLAVP

TXG56999.1 hypothetical protein EZV62_018312 [Acer yangbiense]5.8e-1886.27Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

XP_015579873.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis]1.5e-1888.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

XP_021658712.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis]5.8e-1886.27Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

TrEMBL top hitse value%identityAlignment
A0A0A0LQM4 Uncharacterized protein7.3e-1988.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

A0A1S4E4H5 DNA-directed RNA polymerases II, IV and V subunit 127.3e-1988.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

A0A6J1C6Z8 DNA-directed RNA polymerases II, IV and V subunit 127.3e-1988.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

A0A6J1GTY0 DNA-directed RNA polymerases II, IV and V subunit 127.3e-1988.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

A0A6J1KJQ4 DNA-directed RNA polymerases II, IV and V subunit 127.3e-1988.24Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

SwissProt top hitse value%identityAlignment
P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC45.4e-1155.1Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R + F+ +
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC45.4e-1155.1Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R + F+ +
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC45.4e-1155.1Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R + F+ +
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

Q9C8M4 DNA-directed RNA polymerase subunit 12-like protein3.2e-1173.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 124.1e-1978.43Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit2.3e-1273.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit2.9e-2078.43Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR + +E +
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCCGAACCAGTGAGCTACATATGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGCAGACTAAGCTTTGAGGGGAAGCCCAAAAGGGAAAACCTAAAGAGGACAATATTTGCTAGTAGTGGATCTGGGTCGTTACAAATGGTAT
CAAAGCCTGACAGCGGACGATGTGCCAGCCTTCTCGCTGTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTCAACCCGAACCAGTGAGCTACATATGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGCAGACTAAGCTTTGAGGGGAAGCCCAAAAGGGAAAACCTAAAGAGGACAATATTTGCTAGTAGTGGATCTGGGTCGTTACAAATGGTAT
CAAAGCCTGACAGCGGACGATGTGCCAGCCTTCTCGCTGTTCCTTAA
Protein sequenceShow/hide protein sequence
MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGKPKRENLKRTIFASSGSGSLQMVSKPDSGRCASLLAVP