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Carg06662 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06662
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncoiled-coil domain-containing protein 12-like
Genome locationCarg_Chr18:529588..532227
RNA-Seq ExpressionCarg06662
SyntenyCarg06662
Gene Ontology termsNA
InterPro domainsIPR013169 - mRNA splicing factor Cwf18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]2.5e-6599.26Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
KAG7012183.1 Coiled-coil domain-containing protein 12 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-66100Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]2.5e-6599.26Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]8.1e-6497.04Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]2.8e-6497.78Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGED+ENGAAADTEE NLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
TrEMBL top hitse value%identityAlignment
A0A1S3ATB1 coiled-coil domain-containing protein 125.5e-5889.63Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
A0A5D3BJ95 Coiled-coil domain-containing protein 125.5e-5889.63Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDS EQVAAAR+ERL+ALRAAQELLNA DEK S GED+ENGA ADT+E NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPV TEPPQ KEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X12.0e-6091.85Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
A0A6J1GST8 coiled-coil domain-containing protein 12-like1.2e-6599.26Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X13.9e-6497.04Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
        MATEEDSVEQVAAARQERLRALR AQELLNAPDEKTSGGEDQENG AADTEE NLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
SwissProt top hitse value%identityAlignment
Q8R344 Coiled-coil domain-containing protein 123.1e-1338.97Show/hide
Query:  VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEI--NLGMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFV
        +E+ A  R+ERL+ALR      +  D     GE Q      + EE+  + G++ RNYVP D++L+  ++  A PV      K +   A   P ++E    
Subjt:  VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEI--NLGMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQLKEDPFV

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
Q8WUD4 Coiled-coil domain-containing protein 121.3e-1137.32Show/hide
Query:  VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENG--------AAADTEEINLGMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQL
        +E+ A  R+ERL+ALR          EKT G +D+E+G           +  E +  ++ RNYVP D++L++ ++  A PV      K +   A   P +
Subjt:  VEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENG--------AAADTEEINLGMKFRNYVPHDKELQEGKL--APPVL----PKFEDPVATEPPQL

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        +E    N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
Arabidopsis top hitse value%identityAlignment
AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).3.0e-4066.42Show/hide
Query:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPF
        MA+E++S+EQ AAAR+E L+ALRAAQEL           E +E+G     EE    MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPF
Subjt:  MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLM E
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMGE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTGAAGAAGACTCCGTCGAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTC
TGGAGGAGAGGATCAAGAGAATGGCGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGC
TTGCCCCGCCTGTATTGCCTAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTC
AGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
AGGGTTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTACTGCCAGGGCTTTTGCGCCAGAAACTCTCCGTTTCCTCTCTTCTGCCATTGCTTGAAGCTTCTGAAGCAGCTC
TTGCGAGTGCAATTTTGTGAAGAAAGCTGTTATTCCTCTCGAGTTTTTCTTTCTTTTCTTTTCAGATATTTTACGTACAATAGGCAATGGCAACTGAAGAAGACTCCGTC
GAACAAGTTGCTGCAGCACGTCAAGAGAGATTGAGAGCTCTAAGAGCTGCTCAGGAACTGTTAAACGCTCCAGATGAGAAAACTTCTGGAGGAGAGGATCAAGAGAATGG
CGCTGCCGCAGATACCGAAGAAATTAATCTTGGTATGAAATTCCGGAACTATGTTCCTCATGATAAGGAGCTACAGGAGGGTAAGCTTGCCCCGCCTGTATTGCCTAAGT
TTGAGGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTGAATATTGCTCCAAAAAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTT
GATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTGAGTAG
Protein sequenceShow/hide protein sequence
MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADTEEINLGMKFRNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALYKLMGE