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Carg06676 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06676
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBHLH domain-containing protein
Genome locationCarg_Chr18:600955..601313
RNA-Seq ExpressionCarg06676
SyntenyCarg06676
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3798.89Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

KAG7012197.1 Transcription factor PRE3, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-38100Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]4.3e-3797.78Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]1.9e-3798.89Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]2.5e-3797.78Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSSA+RISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein2.1e-3797.78Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSS+VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like2.7e-3797.78Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like5.7e-3597.67Show/hide
Query:  SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        SRSRQSS VRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like9.4e-3898.89Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like8.0e-3797.78Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSG SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL TSDTAQAAIIRSLLTQ
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI78.0e-2673.33Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL
        MS RSRSR SSA RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC+YIRSLHREVDDLSERL+ELL  +D  TAQAA+IR LL
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI62.7e-2675.28Show/hide
Query:  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL
        S RSRSRQS + RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+EVDDLSERLSELL TSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI62.7e-2675.28Show/hide
Query:  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL
        S RSRSRQS + RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETCNYIRSLH+EVDDLSERLSELL TSD  +AQAAIIRSLL
Subjt:  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE69.4e-2773.91Show/hide
Query:  MSGR--SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL
        MS R  SRSRQS + RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+LHREVDDLS+RLSELL ++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE37.7e-2979.57Show/hide
Query:  MSG-RSRSRQSSAV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+LHREVDDLSERLSELL  SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSAV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein6.7e-2873.91Show/hide
Query:  MSGR--SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL
        MS R  SRSRQS + RISD+QI+DLV KLQ L+PE+R R SDKVSA+KVLQETCNYIR+LHREVDDLS+RLSELL ++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 15.5e-3079.57Show/hide
Query:  MSG-RSRSRQSSAV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        MSG RSRSRQSS   RIS++QI DL+ KLQQLLPE+R +R SDKVSAA+VLQ+TCNYIR+LHREVDDLSERLSELL  SDTAQAA+IRSLLTQ
Subjt:  MSG-RSRSRQSSAV-RISDEQITDLVHKLQQLLPEIR-NRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein8.5e-2365.93Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL--VTSDTAQAAIIRSLL
        MS R   + S+A RISD+Q+ DLV KL+Q LPEI   R SDKVSA+KVLQETCNYIR LHREVD+LS+RLS+LL  V  D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL--VTSDTAQAAIIRSLL

AT3G47710.1 BANQUO 37.6e-2466.67Show/hide
Query:  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ
        S +SRSRQ+ A  I+DEQI DLV +L +LLPE+  NR S KVSA++VLQETC+YIR+L +EVDDLSERLS+LL ++D+AQAA+IRSLL Q
Subjt:  SGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-2265.93Show/hide
Query:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL--VTSDTAQAAIIRSLL
        MS R   + SSA RISD Q+ DLV KL+Q+LPEI + R SDK SA+KVLQETCNYIR+L+REVD+LSERLS+LL  V  D+ +AA+IRSLL
Subjt:  MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEI-RNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELL--VTSDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCG
CCATTCTGATAAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGG
TGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGCAGATCTCGTTCGAGGCAATCGAGTGCGGTAAGAATCAGCGACGAGCAAATCACTGACCTCGTTCATAAGCTGCAACAGCTCTTGCCCGAGATTCGTAATCG
CCATTCTGATAAGGTTTCAGCTGCAAAGGTTTTGCAAGAGACATGCAACTATATTCGAAGTTTACATAGAGAAGTAGACGATCTGAGTGAGAGATTGTCGGAGTTGTTGG
TGACATCCGACACAGCTCAAGCAGCCATTATAAGAAGCTTGCTCACACAGTGA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSSAVRISDEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLVTSDTAQAAIIRSLLTQ