; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06708 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06708
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsnakin-2-like
Genome locationCarg_Chr18:780998..782012
RNA-Seq ExpressionCarg06708
SyntenyCarg06708
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012229.1 Snakin-2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-62100Show/hide
Query:  MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYT
        MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYT
Subjt:  MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYT

Query:  GMTTHGNKTKCP
        GMTTHGNKTKCP
Subjt:  GMTTHGNKTKCP

XP_008438094.1 PREDICTED: snakin-2-like isoform X1 [Cucumis melo]4.3e-3464.1Show/hide
Query:  LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGM----------VRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMC
        LLLGV  FLCLS     H   +  DG      GM          +R  N R+M  IDCG ECKRRCGAHSRPNRC+R CGTCC RC CVPPGTSGNREMC
Subjt:  LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGM----------VRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMC

Query:  GTCYTGMTTHGNKTKCP
        GTCYT MTTHGNKTKCP
Subjt:  GTCYTGMTTHGNKTKCP

XP_022954950.1 snakin-2-like [Cucurbita moschata]1.0e-5996.52Show/hide
Query:  MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGT
        MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNP   GGGGGMVRRPNERVM KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGT
Subjt:  MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGT

Query:  CYTGMTTHGNKTKCP
        CYTGMTTHGNKTKCP
Subjt:  CYTGMTTHGNKTKCP

XP_022994681.1 snakin-2-like [Cucurbita maxima]3.0e-5693.1Show/hide
Query:  MAARF-LLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCG
        MAARF LLLGVLAFLCLSPASFLHG  VGFDGNP   GGGGG VRRPNERVM KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCG
Subjt:  MAARF-LLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCG

Query:  TCYTGMTTHGNKTKCP
        TCYTGMTTHGNKTKCP
Subjt:  TCYTGMTTHGNKTKCP

XP_023542413.1 snakin-2-like [Cucurbita pepo subsp. pepo]2.1e-5795.58Show/hide
Query:  MAARF-LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCY
        MAARF LLLGVLAFLCLSPAS LHGA VGFDGNPGGGGG VRRPNERVM KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCY
Subjt:  MAARF-LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCY

Query:  TGMTTHGNKTKCP
        TGMTTHGNKTKCP
Subjt:  TGMTTHGNKTKCP

TrEMBL top hitse value%identityAlignment
A0A1S3AVJ9 snakin-2-like isoform X21.5e-3266.06Show/hide
Query:  LLLGVLAFLCLSPASF--LHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMT
        LLLGV  FLCLS  S         G          ++R  N R+M  IDCG ECKRRCGAHSRPNRC+R CGTCC RC CVPPGTSGNREMCGTCYT MT
Subjt:  LLLGVLAFLCLSPASF--LHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMT

Query:  THGNKTKCP
        THGNKTKCP
Subjt:  THGNKTKCP

A0A1S3AW57 snakin-2-like isoform X12.1e-3464.1Show/hide
Query:  LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGM----------VRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMC
        LLLGV  FLCLS     H   +  DG      GM          +R  N R+M  IDCG ECKRRCGAHSRPNRC+R CGTCC RC CVPPGTSGNREMC
Subjt:  LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGM----------VRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMC

Query:  GTCYTGMTTHGNKTKCP
        GTCYT MTTHGNKTKCP
Subjt:  GTCYTGMTTHGNKTKCP

A0A6J1CAF9 snakin-2-like1.1e-3266.67Show/hide
Query:  ARF-LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTG
        ARF LLLGVL FLCLS          GF+G        VR PN R+M  IDCG  CKRRCGAHSRP  C+R CGTCC RC CVPPGTSGNRE+CG CYTG
Subjt:  ARF-LLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTG

Query:  MTTHGNKTKCP
        MTTH NKTKCP
Subjt:  MTTHGNKTKCP

A0A6J1GTU1 snakin-2-like4.9e-6096.52Show/hide
Query:  MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGT
        MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNP   GGGGGMVRRPNERVM KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGT
Subjt:  MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGT

Query:  CYTGMTTHGNKTKCP
        CYTGMTTHGNKTKCP
Subjt:  CYTGMTTHGNKTKCP

A0A6J1JZU9 snakin-2-like1.5e-5693.1Show/hide
Query:  MAARF-LLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCG
        MAARF LLLGVLAFLCLSPASFLHG  VGFDGNP   GGGGG VRRPNERVM KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCG
Subjt:  MAARF-LLLGVLAFLCLSPASFLHGAPVGFDGNP---GGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCG

Query:  TCYTGMTTHGNKTKCP
        TCYTGMTTHGNKTKCP
Subjt:  TCYTGMTTHGNKTKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 119.9e-1861.9Show/hide
Query:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        KIDC   C+ RC   SRPN C R CGTCC RCNCV PGTSGN + C  CY  +TTHG + KCP
Subjt:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

P46687 Gibberellin-regulated protein 35.3e-1960Show/hide
Query:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        ++KIDCG  CK RC   SRPN CLR C +CC RCNCVPPGT+GN  +C  CY  +TT G + KCP
Subjt:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

P46688 Gibberellin-regulated protein 22.0e-1860Show/hide
Query:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        ++KIDCG  CK RC   SR   CLR C +CC RCNCVPPGTSGN  +C  CY  +TTHG + KCP
Subjt:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

Q93X17 Snakin-28.1e-2068.25Show/hide
Query:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        KIDCG  C  RC   SRP  C R CGTCC RCNCVPPGTSGN E C  CY  +TTHGNK KCP
Subjt:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

Q9LFR3 Gibberellin-regulated protein 145.3e-1960.61Show/hide
Query:  VMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        V  +IDC   C  RCG HSR N C+R C TCC RC CVPPGT GN+E CG+CY  M T G K+KCP
Subjt:  VMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 16.0e-1860.32Show/hide
Query:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        KIDCG  C  RC    RP  C R CGTCC RCNCVPPGT GN + C  CY  +TTHG + KCP
Subjt:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

AT2G18420.1 Gibberellin-regulated family protein7.1e-1961.9Show/hide
Query:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        KIDC   C+ RC   SRPN C R CGTCC RCNCV PGTSGN + C  CY  +TTHG + KCP
Subjt:  KIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

AT4G09600.1 GAST1 protein homolog 33.7e-2060Show/hide
Query:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        ++KIDCG  CK RC   SRPN CLR C +CC RCNCVPPGT+GN  +C  CY  +TT G + KCP
Subjt:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

AT4G09610.1 GAST1 protein homolog 21.4e-1960Show/hide
Query:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        ++KIDCG  CK RC   SR   CLR C +CC RCNCVPPGTSGN  +C  CY  +TTHG + KCP
Subjt:  MMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP

AT5G14920.1 Gibberellin-regulated family protein3.7e-2060.61Show/hide
Query:  VMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP
        V  +IDC   C  RCG HSR N C+R C TCC RC CVPPGT GN+E CG+CY  M T G K+KCP
Subjt:  VMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTCGTTTCCTTCTTCTTGGAGTTCTTGCCTTCCTTTGCCTTTCACCGGCAAGCTTTCTTCATGGTGCGCCGGTGGGCTTCGATGGAAACCCCGGAGGAGGAGG
AGGGATGGTGAGGAGGCCAAACGAGAGGGTGATGATGAAAATAGACTGTGGATGGGAGTGCAAGCGGCGATGTGGGGCGCATTCGAGGCCGAACCGGTGCTTGAGGGTGT
GCGGGACGTGCTGCTTGCGCTGCAACTGCGTGCCGCCGGGGACTTCAGGTAACCGTGAGATGTGCGGCACTTGCTACACCGGCATGACCACGCATGGCAACAAGACCAAG
TGCCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTCGTTTCCTTCTTCTTGGAGTTCTTGCCTTCCTTTGCCTTTCACCGGCAAGCTTTCTTCATGGTGCGCCGGTGGGCTTCGATGGAAACCCCGGAGGAGGAGG
AGGGATGGTGAGGAGGCCAAACGAGAGGGTGATGATGAAAATAGACTGTGGATGGGAGTGCAAGCGGCGATGTGGGGCGCATTCGAGGCCGAACCGGTGCTTGAGGGTGT
GCGGGACGTGCTGCTTGCGCTGCAACTGCGTGCCGCCGGGGACTTCAGGTAACCGTGAGATGTGCGGCACTTGCTACACCGGCATGACCACGCATGGCAACAAGACCAAG
TGCCCTTAA
Protein sequenceShow/hide protein sequence
MAARFLLLGVLAFLCLSPASFLHGAPVGFDGNPGGGGGMVRRPNERVMMKIDCGWECKRRCGAHSRPNRCLRVCGTCCLRCNCVPPGTSGNREMCGTCYTGMTTHGNKTK
CP