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Carg06711 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06711
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHIG1 domain-containing protein
Genome locationCarg_Chr18:798350..799461
RNA-Seq ExpressionCarg06711
SyntenyCarg06711
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573043.1 RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia]3.9e-3798.78Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

KAG7012232.1 RING-H2 finger protein ATL48 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-37100Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]3.9e-3798.78Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

XP_022994684.1 RING-H2 finger protein ATL48-like [Cucurbita maxima]1.7e-3596.34Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGE NLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]9.7e-3695.12Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVP+GA VTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYG+NPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein1.3e-3390.24Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVV QGATVALMVGTA+YYGENPWR S
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

A0A1S3AVM7 RING-H2 finger protein ATL481.7e-3390.24Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVV QGATVALMVGTAFYYGENPWR S
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

A0A5A7UHA1 RING-H2 finger protein ATL481.7e-3390.24Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVV QGATVALMVGTAFYYGENPWR S
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like1.9e-3798.78Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

A0A6J1K3J5 RING-H2 finger protein ATL48-like8.0e-3696.34Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS
        MSSGE NLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVV QGATVALMVGTAFYYGENPWRPS
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B6.8e-0844.29Show/hide
Query:  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATV-ALMVGTA
        S      E F+ K R  NP+VP+G   TA VLT GL  F QGNSQ  +++M  ++ AQG T+ A+++G A
Subjt:  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial2.2e-0643.1Show/hide
Query:  PLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENP
        PLVP+G   T G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Subjt:  PLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENP

Q7X843 RING-H2 finger protein ATL482.2e-3077.5Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GA +TAGVLTAGLISFR+GNSQLGQ+LMRARVV QGATVALMVGT +YYG+NPW+
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial1.6e-0953.97Show/hide
Query:  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATV-ALMVGTA
        E FV K R  NP+VP+G   TA  LT GL SF +GNSQ  Q++MR R+ AQG TV A+++G A
Subjt:  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A1.5e-0744.29Show/hide
Query:  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGAT-VALMVGTA
        S      E F+ K R  NP+VP+G   TA  LT GL  F +G S   Q++MR R+ AQG T VA+++G A
Subjt:  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein1.5e-3177.5Show/hide
Query:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GA +TAGVLTAGLISFR+GNSQLGQ+LMRARVV QGATVALMVGT +YYG+NPW+
Subjt:  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTGCATTTGTAACTGCTGGAGTTCTCACTGCTGG
ATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGCCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACT
ATGGCGAGAATCCCTGGCGGCCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
TACCTCTTTCTTTCCCAACCAATTCTTCCTGAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTCTTGATTCAGATTCTCCTCCCTTCCCGCGTCGTTCAATTAGAAAC
GGCATCGCGATTCACAGATATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTGCATTTGTAACTG
CTGGAGTTCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGCCCAAGGCGCTACAGTAGCACTGATG
GTTGGCACCGCTTTCTACTATGGCGAGAATCCCTGGCGGCCGAGTTAATATGTCAATGTTCTTTTTATGATTTTCTTTTCAGGATCTTGTTTTACGTCGAGAGATTTCGG
TAACATTGAAAGATTGTTGTCTTTCAATCTTCCTTCAAATATAACAACAGGTCATTCGGTGATTTGATGACAATATTTATGTTATGTATTCATTCCTAGGGCATAGATGA
GTTGCCTTCAAAGATATAAATCTTGGTGTTATGTTGGAATATTGAAATTATAAGAGAAAATCATTGGGTATGTTCTC
Protein sequenceShow/hide protein sequence
MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQGATVALMVGTAFYYGENPWRPS