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Carg06718 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06718
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-H2 finger protein ATL56-like
Genome locationCarg_Chr18:820742..821152
RNA-Seq ExpressionCarg06718
SyntenyCarg06718
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON93371.1 43kDa postsynaptic protein [Trema orientale]2.7e-3863.91Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNL--GKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCR
        MVMEIV+S +LL VGIAVLVVIHVCIVGRAFR   +G+     SN+   KN+S++DL+ +PC++Y  G+ + T+ VD  C VCLE FKTG++CRLLP+CR
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNL--GKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCR

Query:  HSFHVECIDSWLLKTPICPICRTCAVVPKFGLV
        HSFH +CIDSWLLK PICPICRT A VPK G+V
Subjt:  HSFHVECIDSWLLKTPICPICRTCAVVPKFGLV

TQD76870.1 hypothetical protein C1H46_037576 [Malus baccata]2.9e-3759.4Show/hide
Query:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREG---IWRSNLG--KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRH
        MEI++S +LL VG+AVLVVIHVCI+GRAF RG  +G   + RS++   K +SN++L  LPC++Y + EK +T    ++C VCLE FK GE+CRLLPNCRH
Subjt:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREG---IWRSNLG--KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRH

Query:  SFHVECIDSWLLKTPICPICRTCAVVPKFGLVL
        SFH +CIDSWLLKTP+CP+CRTCA  PK  + L
Subjt:  SFHVECIDSWLLKTPICPICRTCAVVPKFGLVL

XP_015868270.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba]9.1e-3962.22Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNC
        MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS++G K +SN+DL+ LPC++Y  G  + ++   ++C VCLE FK GE+CRLLPNC
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNC

Query:  RHSFHVECIDSWLLKTPICPICRTCAVVPKFGLVL
        RHSFH  CIDSWLLKTPICPICRTCA  PK  ++L
Subjt:  RHSFHVECIDSWLLKTPICPICRTCAVVPKFGLVL

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]2.8e-72100Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV

Query:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL
        ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL
Subjt:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]8.2e-7299.26Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV

Query:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL
        ECIDSWLLKTPICPICRTCA VPKFGLVLEHQNDPL
Subjt:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL

TrEMBL top hitse value%identityAlignment
A0A2P5F6F5 43kDa postsynaptic protein1.3e-3863.91Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNL--GKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCR
        MVMEIV+S +LL VGIAVLVVIHVCIVGRAFR   +G+     SN+   KN+S++DL+ +PC++Y  G+ + T+ VD  C VCLE FKTG++CRLLP+CR
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWR---SNL--GKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCR

Query:  HSFHVECIDSWLLKTPICPICRTCAVVPKFGLV
        HSFH +CIDSWLLK PICPICRT A VPK G+V
Subjt:  HSFHVECIDSWLLKTPICPICRTCAVVPKFGLV

A0A540KRN2 RING-type domain-containing protein1.4e-3759.4Show/hide
Query:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREG---IWRSNLG--KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRH
        MEI++S +LL VG+AVLVVIHVCI+GRAF RG  +G   + RS++   K +SN++L  LPC++Y + EK +T    ++C VCLE FK GE+CRLLPNCRH
Subjt:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAF-RGEREG---IWRSNLG--KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRH

Query:  SFHVECIDSWLLKTPICPICRTCAVVPKFGLVL
        SFH +CIDSWLLKTP+CP+CRTCA  PK  + L
Subjt:  SFHVECIDSWLLKTPICPICRTCAVVPKFGLVL

A0A6J1GQW8 RING-H2 finger protein ATL56-like1.4e-72100Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV

Query:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL
        ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL
Subjt:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL

A0A6J1JUU5 RING-H2 finger protein ATL56-like4.0e-7299.26Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHV

Query:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL
        ECIDSWLLKTPICPICRTCA VPKFGLVLEHQNDPL
Subjt:  ECIDSWLLKTPICPICRTCAVVPKFGLVLEHQNDPL

A0A6P3YXL3 RING-H2 finger protein ATL74-like4.4e-3962.22Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNC
        MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G     + RS++G K +SN+DL+ LPC++Y  G  + ++   ++C VCLE FK GE+CRLLPNC
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREG-----IWRSNLG-KNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNC

Query:  RHSFHVECIDSWLLKTPICPICRTCAVVPKFGLVL
        RHSFH  CIDSWLLKTPICPICRTCA  PK  ++L
Subjt:  RHSFHVECIDSWLLKTPICPICRTCAVVPKFGLVL

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL101.2e-1442.68Show/hide
Query:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV
        R +  K +  + L   P   Y    + +  G+D ECV+CL  F +GE+ RLLP C H FHV CID WL +   CP CR C V
Subjt:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV

Q6NML0 E3 ubiquitin-protein ligase ATL763.6e-1442.68Show/hide
Query:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV
        RS+  K +  + L   P   Y    + +  G+  ECV+CL  F +GE+ RLLP C H FHV CID WL     CP CR C V
Subjt:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV

Q8LBA0 NEP1-interacting protein-like 22.1e-1443.02Show/hide
Query:  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR
        ERE ++     + LS   L KLPCY   S    +Q T+     C +CL+  KTGE  R LP C H+FH+ C+D WL++   CPICR
Subjt:  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR

Q9LS99 RING-H2 finger protein ATL778.1e-1441.98Show/hide
Query:  SNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV
        S++ K +  + L+ LP   Y    + +  GV  ECV+CL  F  GE+ R+LP C H FH+ CID WL +   CP CR C V
Subjt:  SNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV

Q9M0C3 RING-H2 finger protein ATL141.1e-1344.87Show/hide
Query:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR
        R      LS + +++LP  ++K  E  S  G D +CVVC++GF+ G+ CR LP C H FH +C+D WL+K   CPICR
Subjt:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR

Arabidopsis top hitse value%identityAlignment
AT1G49210.1 RING/U-box superfamily protein2.6e-1542.68Show/hide
Query:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV
        RS+  K +  + L   P   Y    + +  G+  ECV+CL  F +GE+ RLLP C H FHV CID WL     CP CR C V
Subjt:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV

AT1G49220.1 RING/U-box superfamily protein8.9e-1642.68Show/hide
Query:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV
        R +  K +  + L   P   Y    + +  G+D ECV+CL  F +GE+ RLLP C H FHV CID WL +   CP CR C V
Subjt:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV

AT1G74410.1 RING/U-box superfamily protein1.5e-1543.02Show/hide
Query:  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR
        ERE ++     + LS   L KLPCY   S    +Q T+     C +CL+  KTGE  R LP C H+FH+ C+D WL++   CPICR
Subjt:  EREGIWRSNLGKNLSNQDLEKLPCYEYKSG--EKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR

AT3G18773.1 RING/U-box superfamily protein5.7e-1541.98Show/hide
Query:  SNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV
        S++ K +  + L+ LP   Y    + +  GV  ECV+CL  F  GE+ R+LP C H FH+ CID WL +   CP CR C V
Subjt:  SNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICRTCAV

AT4G30370.1 RING/U-box superfamily protein7.5e-1544.87Show/hide
Query:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR
        R      LS + +++LP  ++K  E  S  G D +CVVC++GF+ G+ CR LP C H FH +C+D WL+K   CPICR
Subjt:  RSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKTPICPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATCCATGTGTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGG
GATTTGGAGAAGCAATTTGGGGAAGAACCTTTCAAATCAGGATTTGGAGAAGCTGCCTTGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGG
AATGTGTTGTTTGTTTGGAGGGCTTCAAAACAGGGGAAAGATGCAGGTTGTTGCCCAATTGTAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACA
CCCATTTGCCCAATTTGCAGAACTTGCGCTGTTGTTCCTAAATTTGGCTTGGTTTTGGAGCACCAAAATGACCCTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGGAGATTGTGGTGTCGGCGGTTCTGTTGCTGGTCGGAATCGCTGTTCTGGTAGTGATCCATGTGTGTATTGTGGGGAGAGCTTTCAGAGGAGAAAGGGAAGG
GATTTGGAGAAGCAATTTGGGGAAGAACCTTTCAAATCAGGATTTGGAGAAGCTGCCTTGTTATGAGTACAAATCAGGGGAGAAACAGAGCACAAATGGCGTTGATTTGG
AATGTGTTGTTTGTTTGGAGGGCTTCAAAACAGGGGAAAGATGCAGGTTGTTGCCCAATTGTAGGCATAGCTTCCATGTTGAGTGCATAGATTCATGGCTTTTGAAGACA
CCCATTTGCCCAATTTGCAGAACTTGCGCTGTTGTTCCTAAATTTGGCTTGGTTTTGGAGCACCAAAATGACCCTTTATAA
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGIWRSNLGKNLSNQDLEKLPCYEYKSGEKQSTNGVDLECVVCLEGFKTGERCRLLPNCRHSFHVECIDSWLLKT
PICPICRTCAVVPKFGLVLEHQNDPL