; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06766 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06766
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpentatricopeptide repeat-containing protein At5g50280, chloroplastic
Genome locationCarg_Chr18:1135477..1136248
RNA-Seq ExpressionCarg06766
SyntenyCarg06766
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573097.1 hypothetical protein SDJN03_26984, partial [Cucurbita argyrosperma subsp. sororia]6.7e-2498.33Show/hide
Query:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEV
        NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEE+
Subjt:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEV

KAG6584120.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1266.67Show/hide
Query:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        EAEI  DEDK+Q G V  NSRA+ +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Subjt:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

KAG7012285.1 hypothetical protein SDJN02_25037, partial [Cucurbita argyrosperma subsp. argyrosperma]5.8e-52100Show/hide
Query:  MRSTSSVLKIELIGLTEFGPLFLLPVTLIVLTRPNEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVCRSFFF
        MRSTSSVLKIELIGLTEFGPLFLLPVTLIVLTRPNEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVCRSFFF
Subjt:  MRSTSSVLKIELIGLTEFGPLFLLPVTLIVLTRPNEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVCRSFFF

Query:  MEELEYEET
        MEELEYEET
Subjt:  MEELEYEET

KAG7019709.1 Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.4e-1266.67Show/hide
Query:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        EAEI  DEDK+Q G V  NSRA+ +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Subjt:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

XP_023001232.1 pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucurbita maxima]4.5e-1265Show/hide
Query:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        EAEI  D+DK+Q GSV  NSR + +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Subjt:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

TrEMBL top hitse value%identityAlignment
A0A1S3AY38 pentatricopeptide repeat-containing protein At5g50280, chloroplastic1.4e-1159.02Show/hide
Query:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        NEAE+ L+EDKEQ GS   NSR + +G+VG IV  ARNL +N+TLG++LG+F+GRI E+ C
Subjt:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

A0A5D3BLK1 Pentatricopeptide repeat-containing protein1.4e-1159.02Show/hide
Query:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        NEAE+ L+EDKEQ GS   NSR + +G+VG IV  ARNL +N+TLG++LG+F+GRI E+ C
Subjt:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

A0A6J1C7V4 pentatricopeptide repeat-containing protein At5g50280, chloroplastic5.3e-1162.3Show/hide
Query:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        +EAEI +DE   Q  SV  N RA+ +GVVG I+RTARNLPEN TLG++L DFDGRI E+ C
Subjt:  NEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

A0A6J1E8D2 pentatricopeptide repeat-containing protein At5g50280, chloroplastic1.1e-1165Show/hide
Query:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        EAEI   EDK+Q G V  NSRA+ +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Subjt:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

A0A6J1KFZ0 pentatricopeptide repeat-containing protein At5g50280, chloroplastic2.2e-1265Show/hide
Query:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC
        EAEI  D+DK+Q GSV  NSR + +GVVG IVRTARNLP+N TLG++LGDF+G+I E+ C
Subjt:  EAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTCTACGTCTTCGGTCTTAAAGATAGAACTGATTGGGCTTACGGAATTCGGGCCTCTATTTCTGCTTCCAGTAACCCTAATCGTCCTGACGAGGCCCAATGAAGC
TGAAATTGATCTCGACGAAGACAAGGAGCAATTTGGCTCCGTGAGGTCGAATTCTAGGGCTATATCGAATGGCGTCGTCGGAGCGATTGTGCGAACTGCGAGGAATTTGC
CGGAAAATGTGACTCTGGGGGATTCTTTGGGAGATTTTGACGGAAGAATTTGTGAGGAAGTTTGTCGTAGCTTTTTCTTTATGGAGGAACTTGAATATGAGGAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTCTACGTCTTCGGTCTTAAAGATAGAACTGATTGGGCTTACGGAATTCGGGCCTCTATTTCTGCTTCCAGTAACCCTAATCGTCCTGACGAGGCCCAATGAAGC
TGAAATTGATCTCGACGAAGACAAGGAGCAATTTGGCTCCGTGAGGTCGAATTCTAGGGCTATATCGAATGGCGTCGTCGGAGCGATTGTGCGAACTGCGAGGAATTTGC
CGGAAAATGTGACTCTGGGGGATTCTTTGGGAGATTTTGACGGAAGAATTTGTGAGGAAGTTTGTCGTAGCTTTTTCTTTATGGAGGAACTTGAATATGAGGAAACTTGA
TTGAACTTAGAACTGATGAAGTGCTGAATGTCTGATAATTTGTTTGCCATGGATATCAACTTGATGCTTGACATTTGATATATCACTACATTTTTGTTATTCTTCGAGGA
GGCTTGGCTGCGAATATGAGATCTGAATCATTCTTACAAGGTGTGGAAACCTCTTCCTATTAGATGCGTTTTAAAACCGTCAGGTTGACGACTATACTTAACCGGTCAAA
ACAG
Protein sequenceShow/hide protein sequence
MRSTSSVLKIELIGLTEFGPLFLLPVTLIVLTRPNEAEIDLDEDKEQFGSVRSNSRAISNGVVGAIVRTARNLPENVTLGDSLGDFDGRICEEVCRSFFFMEELEYEET