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Carg06774 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06774
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S21, chloroplastic-like
Genome locationCarg_Chr18:1175997..1180679
RNA-Seq ExpressionCarg06774
SyntenyCarg06774
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001911 - Ribosomal protein S21
IPR038380 - Ribosomal protein S21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573106.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.7e-5275.61Show/hide
Query:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWS
        LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR           
Subjt:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWS

Query:  TLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQLATQDKIVL
                             RVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQ      + L
Subjt:  TLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQLATQDKIVL

KAG7012293.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-126100Show/hide
Query:  MCAGDSWPITVAMSLPTGTYASPARQGLGRQSAEEVEDGEDVSYEAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQV
        MCAGDSWPITVAMSLPTGTYASPARQGLGRQSAEEVEDGEDVSYEAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQV
Subjt:  MCAGDSWPITVAMSLPTGTYASPARQGLGRQSAEEVEDGEDVSYEAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQV

Query:  LRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEF
        LRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEF
Subjt:  LRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEF

Query:  YQLATQDKIVLWSSIGCKALAFVETTKAWGLSSALKLSCN
        YQLATQDKIVLWSSIGCKALAFVETTKAWGLSSALKLSCN
Subjt:  YQLATQDKIVLWSSIGCKALAFVETTKAWGLSSALKLSCN

XP_022954830.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata]6.3e-5178.21Show/hide
Query:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWS
        LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR           
Subjt:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWS

Query:  TLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                             RVWKPESRAEEQQKQE TRRKDMDEGDDNWEFYQ+
Subjt:  TLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

XP_022994169.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]2.0e-4975.47Show/hide
Query:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLC
        +AKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR        
Subjt:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLC

Query:  SWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                                RVWKPESRAEEQ KQETTRRKDM+E +DNW+FYQ+
Subjt:  SWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

XP_023542788.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo]2.2e-5178.34Show/hide
Query:  KLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSW
        KLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR          
Subjt:  KLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSW

Query:  STLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                              RVWKPESRAEEQ KQETTRRKDMDEGDDNWEFYQ+
Subjt:  STLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein1.4e-2450.63Show/hide
Query:  AKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCS
        +KL RL A  +R +V SSS E     L + NYN+LITV  N+ E+++VN+FRRQVLRAGILQECKRRRFFENSQAKRKRKARE+AKRNRKR         
Subjt:  AKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCS

Query:  WSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                               R  +P+S   EQ  Q+T   K+ DE DDNW+FYQ+
Subjt:  WSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

A0A5A7UHJ6 Ribosomal_S21 domain-containing protein1.7e-2548.3Show/hide
Query:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTL----
        ++K  RL A  +R +V SSS E       + NYNVLITV  N+ E+++VN+FR QVLRAGILQECKRRRFFENSQAKRKRKARE+AKRNRKR   L    
Subjt:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTL----

Query:  ------------FVLCSWSTLLIPNV-KATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                    ++L     LL  N+     L E+  +  GR  +P+S  E+Q  ++T   K+ DE DDNW+FYQ+
Subjt:  ------------FVLCSWSTLLIPNV-KATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

A0A5D3BJF5 Putative Ribosomal protein S21 family protein1.7e-2548.3Show/hide
Query:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTL----
        ++K  RL A  +R +V SSS E       + NYNVLITV  N+ E+++VN+FR QVLRAGILQECKRRRFFENSQAKRKRKARE+AKRNRKR   L    
Subjt:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTL----

Query:  ------------FVLCSWSTLLIPNV-KATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                    ++L     LL  N+     L E+  +  GR  +P+S  E+Q  ++T   K+ DE DDNW+FYQ+
Subjt:  ------------FVLCSWSTLLIPNV-KATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

A0A6J1GTI1 30S ribosomal protein S21, chloroplastic-like3.1e-5178.21Show/hide
Query:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWS
        LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR           
Subjt:  LARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWS

Query:  TLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                             RVWKPESRAEEQQKQE TRRKDMDEGDDNWEFYQ+
Subjt:  TLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

A0A6J1K257 30S ribosomal protein S21, chloroplastic-like9.8e-5075.47Show/hide
Query:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLC
        +AKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR        
Subjt:  EAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLC

Query:  SWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL
                                RVWKPESRAEEQ KQETTRRKDM+E +DNW+FYQ+
Subjt:  SWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQL

SwissProt top hitse value%identityAlignment
P82024 30S ribosomal protein S21, chloroplastic1.3e-1463.33Show/hide
Query:  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR
        YNV + VD+N+ EE+L+N+FRR+V+RAG++QECKRRR+FEN Q ++KRK RE+AKRN +R
Subjt:  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR

Arabidopsis top hitse value%identityAlignment
AT3G27160.1 Ribosomal protein S21 family protein2.7e-1535.19Show/hide
Query:  LAAARTRSSVTSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTL
        +A   T S+ +S S E  S   P L+  N       YNV + V++N+ EE+LVN+FRR+V+R G++QECKRRR+FEN Q ++KR+ R++AKRN+KR    
Subjt:  LAAARTRSSVTSSSPESTS---PILSVRN-------YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTL

Query:  FVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQE---TTRRKDMDEGDDNWE
                                       +P++R  ++ ++E    T+ K  DE +DNWE
Subjt:  FVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQE---TTRRKDMDEGDDNWE

AT5G63300.1 Ribosomal protein S21 family protein5.8e-1053.33Show/hide
Query:  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR
        YNV +   + + EE+LVN F+R   RAG+LQE +RRRFFE+S  K+ RK +E+AK+ RKR
Subjt:  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKR

AT5G63300.2 Ribosomal protein S21 family protein7.5e-1035.9Show/hide
Query:  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKA--------TTLRENKFSTGG
        YNV +   + + EE+LVN F+R   RAG+LQE +RRRFFE+S  K+ RK +E+AK+ RKR    F   S+    +  V++         TL +N +    
Subjt:  YNVLITVDNNDPEEKLVNQFRRQVLRAGILQECKRRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKA--------TTLRENKFSTGG

Query:  RVWKPESRAEEQQKQET
             E   E+  K  T
Subjt:  RVWKPESRAEEQQKQET


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGCCGGTGACAGTTGGCCAATTACGGTTGCAATGTCGTTGCCCACCGGGACCTACGCTTCACCTGCCCGACAGGGGCTCGGCCGGCAGTCCGCAGAGGAAGTGGA
AGACGGGGAAGACGTCTCTTACGAAGCCAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCG
TAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAG
AGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAGGCCTTACTCTCTTTGTATTGTGTTCATGGTC
CACGCTACTAATTCCGAACGTTAAGGCAACTACTTTGAGAGAGAACAAGTTTTCAACCGGAGGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGG
AAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAATTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTG
GCCTTTGTCGAGACGACAAAGGCTTGGGGTCTGTCTTCTGCTTTGAAGTTGAGCTGTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGCCGGTGACAGTTGGCCAATTACGGTTGCAATGTCGTTGCCCACCGGGACCTACGCTTCACCTGCCCGACAGGGGCTCGGCCGGCAGTCCGCAGAGGAAGTGGA
AGACGGGGAAGACGTCTCTTACGAAGCCAAACTGGCACGGTTGGCTGCCGCCAGGACCAGGAGCTCTGTTACGTCTTCTTCCCCAGAATCTACCTCTCCCATCTTAAGCG
TAAGGAATTACAATGTTTTGATCACTGTGGACAATAACGATCCTGAAGAGAAGCTAGTGAATCAGTTCAGGAGACAGGTCTTGAGAGCTGGAATCTTGCAGGAGTGTAAG
AGGAGAAGATTTTTTGAGAACAGCCAGGCGAAGAGAAAGAGGAAAGCTAGAGAATCCGCAAAAAGGAATCGCAAGAGAGGCCTTACTCTCTTTGTATTGTGTTCATGGTC
CACGCTACTAATTCCGAACGTTAAGGCAACTACTTTGAGAGAGAACAAGTTTTCAACCGGAGGAAGGGTTTGGAAGCCTGAATCAAGAGCTGAGGAGCAGCAAAAACAGG
AAACCACTCGGAGGAAGGATATGGATGAGGGAGATGACAACTGGGAGTTCTACCAATTAGCAACACAGGACAAGATTGTTTTGTGGTCGAGTATCGGTTGCAAAGCTTTG
GCCTTTGTCGAGACGACAAAGGCTTGGGGTCTGTCTTCTGCTTTGAAGTTGAGCTGTAATTAA
Protein sequenceShow/hide protein sequence
MCAGDSWPITVAMSLPTGTYASPARQGLGRQSAEEVEDGEDVSYEAKLARLAAARTRSSVTSSSPESTSPILSVRNYNVLITVDNNDPEEKLVNQFRRQVLRAGILQECK
RRRFFENSQAKRKRKARESAKRNRKRGLTLFVLCSWSTLLIPNVKATTLRENKFSTGGRVWKPESRAEEQQKQETTRRKDMDEGDDNWEFYQLATQDKIVLWSSIGCKAL
AFVETTKAWGLSSALKLSCN