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Carg06779 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06779
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNuclear speckle splicing regulatory protein like
Genome locationCarg_Chr18:1196653..1196874
RNA-Seq ExpressionCarg06779
SyntenyCarg06779
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ03822.1 hypothetical protein Acr_16g0004460 [Actinidia rufa]6.9e-0961.76Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPAS
        MVSKVEEA++++QQQ Q          KQ+Q NK K  KFKRSSS++ +DGASSAILLLACIAF+P S
Subjt:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPAS

KAG6584135.1 hypothetical protein SDJN03_20067, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1675.68Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAA-AGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPASSPVSG
        MVSKVEE LR K QQVQ P AA A A AKQIQ NKAKYPKFKRS S+V +DGASSA+LLLACIAF+P  SPV G
Subjt:  MVSKVEEALRRKQQQVQTPHAA-AGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPASSPVSG

KAG7012298.1 hypothetical protein SDJN02_25050, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-28100Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPASSPVSG
        MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPASSPVSG
Subjt:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPASSPVSG

KGN64384.1 hypothetical protein Csa_013100 [Cucumis sativus]7.1e-1472.86Show/hide
Query:  MVSKVEEALRRKQQQVQTPH-----AAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFS
        MVSKVEE LRRK QQV  P       AA A AKQIQ NKAKYPKFKRSSS+V +DGASSA+LLLACIAF+
Subjt:  MVSKVEEALRRKQQQVQTPH-----AAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFS

XP_007037902.1 PREDICTED: uncharacterized protein LOC18605055 [Theobroma cacao]5.3e-0959.72Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAG-----AAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA
        MVSKVEEA++R+QQ  Q  H            KQIQ NK K PKFKRSSS++ +DGASSAILLLACIA +P+
Subjt:  MVSKVEEALRRKQQQVQTPHAAAG-----AAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA

TrEMBL top hitse value%identityAlignment
A0A061FZA4 Uncharacterized protein2.6e-0959.72Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAG-----AAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA
        MVSKVEEA++R+QQ  Q  H            KQIQ NK K PKFKRSSS++ +DGASSAILLLACIA +P+
Subjt:  MVSKVEEALRRKQQQVQTPHAAAG-----AAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA

A0A0A0LTS0 Uncharacterized protein3.5e-1472.86Show/hide
Query:  MVSKVEEALRRKQQQVQTPH-----AAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFS
        MVSKVEE LRRK QQV  P       AA A AKQIQ NKAKYPKFKRSSS+V +DGASSA+LLLACIAF+
Subjt:  MVSKVEEALRRKQQQVQTPH-----AAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFS

A0A4D6KYW9 Uncharacterized protein1.7e-0859.7Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA
        MVSKVEEA++RK+Q  Q          KQIQ NK K  KFKRSSS++ +DGASSAIL LACIA +P+
Subjt:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA

A0A6J1AIR1 uncharacterized protein LOC1104184081.3e-0855.26Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAG---------AAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA
        MVSKVEEA++R+QQ  Q  H                KQIQ NK K PKFKRS+S++ +DGASSAILLLACIA +P+
Subjt:  MVSKVEEALRRKQQQVQTPHAAAG---------AAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPA

A0A7J0FYN8 Uncharacterized protein3.3e-0961.76Show/hide
Query:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPAS
        MVSKVEEA++++QQQ Q          KQ+Q NK K  KFKRSSS++ +DGASSAILLLACIAF+P S
Subjt:  MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G50335.1 unknown protein2.5e-0463.89Show/hide
Query:  NKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPAS
        NK K  +FKRS+S++ +DGASSAI LLACIA S  S
Subjt:  NKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTAAAGTGGAAGAAGCACTCAGAAGGAAGCAGCAGCAAGTTCAGACGCCGCATGCGGCGGCGGGAGCGGCGGCGAAGCAAATCCAGTTCAATAAAGCTAAGTA
TCCCAAGTTTAAGAGAAGTAGCTCCGATGTTGGAGACGACGGCGCCTCTTCCGCCATTCTTTTGCTTGCTTGCATTGCTTTTTCCCCCGCTTCTAGCCCCGTCTCCGGTT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTAAAGTGGAAGAAGCACTCAGAAGGAAGCAGCAGCAAGTTCAGACGCCGCATGCGGCGGCGGGAGCGGCGGCGAAGCAAATCCAGTTCAATAAAGCTAAGTA
TCCCAAGTTTAAGAGAAGTAGCTCCGATGTTGGAGACGACGGCGCCTCTTCCGCCATTCTTTTGCTTGCTTGCATTGCTTTTTCCCCCGCTTCTAGCCCCGTCTCCGGTT
GA
Protein sequenceShow/hide protein sequence
MVSKVEEALRRKQQQVQTPHAAAGAAAKQIQFNKAKYPKFKRSSSDVGDDGASSAILLLACIAFSPASSPVSG