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Carg06818 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06818
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncentromere protein S isoform X2
Genome locationCarg_Chr18:1456966..1460350
RNA-Seq ExpressionCarg06818
SyntenyCarg06818
Gene Ontology termsGO:0000712 - resolution of meiotic recombination intermediates (biological process)
GO:0006312 - mitotic recombination (biological process)
GO:0007129 - synapsis (biological process)
GO:0031297 - replication fork processing (biological process)
GO:0036297 - interstrand cross-link repair (biological process)
GO:0043240 - Fanconi anaemia nuclear complex (cellular component)
GO:0071821 - FANCM-MHF complex (cellular component)
GO:0003682 - chromatin binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR009072 - Histone-fold
IPR029003 - CENP-S/Mhf1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573152.1 Protein MHF1-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5998.43Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDSTAELLRDRFRLSAI IAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILS HRNEHLAASLSSFCHELK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKEDKSAIHITDA
        TKEPQSERKRKKAPKKEDKSAIHITDA
Subjt:  TKEPQSERKRKKAPKKEDKSAIHITDA

KAG7012337.1 Protein MHF1-like protein [Cucurbita argyrosperma subsp. argyrosperma]3.6e-61100Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKEDKSAIHITDA
        TKEPQSERKRKKAPKKEDKSAIHITDA
Subjt:  TKEPQSERKRKKAPKKEDKSAIHITDA

XP_004154006.1 protein MHF1 homolog isoform X2 [Cucumis sativus]1.6e-4882.17Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDS +ELLRDRFRLS+I IAEAEA +SGMEIS PVMTCVA+LAFKYTKQLAKDLELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKE--DKSAIHITDA
        TKEPQSERKRKKAPKK+  D+ A+HI DA
Subjt:  TKEPQSERKRKKAPKKE--DKSAIHITDA

XP_022955266.1 protein MHF1 homolog [Cucurbita moschata]3.3e-5998.43Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDSTAELLR RFRLSAI IAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKEDKSAIHITDA
        TKEPQSERKRKKAPKKEDKSAIHITDA
Subjt:  TKEPQSERKRKKAPKKEDKSAIHITDA

XP_022994496.1 protein MHF1 homolog [Cucurbita maxima]5.1e-6099.21Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDSTAELLRDRFRLSAI IAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKEDKSAIHITDA
        TKEPQSERKRKKAPKKEDKSAIHITDA
Subjt:  TKEPQSERKRKKAPKKEDKSAIHITDA

TrEMBL top hitse value%identityAlignment
A0A0A0LR97 Uncharacterized protein7.5e-4982.17Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDS +ELLRDRFRLS+I IAEAEA +SGMEIS PVMTCVA+LAFKYTKQLAKDLELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKE--DKSAIHITDA
        TKEPQSERKRKKAPKK+  D+ A+HI DA
Subjt:  TKEPQSERKRKKAPKKE--DKSAIHITDA

A0A5D3BHQ8 Centromere protein S isoform X22.7e-4679.07Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        MET MEEDDS +ELLRDRFRLS I IAEAEA +SGMEIS PVMTCVA+LAFK+TKQLAKDLELFA H GRKSVNTEDVIL+AHRNEHLAA L+S C++LK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKE--DKSAIHITDA
         KEPQSERKRKKAPKK+  D+ A+HI +A
Subjt:  TKEPQSERKRKKAPKKE--DKSAIHITDA

A0A6J1C623 protein MHF1 homolog2.7e-4680.77Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKY-TKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHEL
        METG EEDD+  ELL DRFRLS I IAEAEAKR+GMEIS PVMTCVAELAFKY T+QLAKDLELFA H GRKSVNTEDVILSAHRNEHLAASL+SFC++L
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKY-TKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHEL

Query:  KTKEPQSERKRKKAPKKE--DKSAIHITDA
        KTKEPQ+ERKRKKA KKE  D+  +HI DA
Subjt:  KTKEPQSERKRKKAPKKE--DKSAIHITDA

A0A6J1GTB4 protein MHF1 homolog1.6e-5998.43Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDSTAELLR RFRLSAI IAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKEDKSAIHITDA
        TKEPQSERKRKKAPKKEDKSAIHITDA
Subjt:  TKEPQSERKRKKAPKKEDKSAIHITDA

A0A6J1JZB0 protein MHF1 homolog2.5e-6099.21Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        METGMEEDDSTAELLRDRFRLSAI IAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKKAPKKEDKSAIHITDA
        TKEPQSERKRKKAPKKEDKSAIHITDA
Subjt:  TKEPQSERKRKKAPKKEDKSAIHITDA

SwissProt top hitse value%identityAlignment
E1BSW7 Centromere protein S2.0e-0627.52Show/hide
Query:  GMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKE
        G E+ +   + LR     +  C+ +  A+  G+  S   +  ++E+ F+  +  A+DLE+FA H  R ++ +EDV L A R+  L   ++    EL +  
Subjt:  GMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKE

Query:  PQSERKRKK
         + + K+KK
Subjt:  PQSERKRKK

Q2TBR7 Centromere protein S5.2e-0729.01Show/hide
Query:  MEEDDSTAELLRDRF--RLSAI------CIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFC
        MEE++ + E  R  +  RL A       C+ E  A    M+ S   +  ++E+ F   +  AKDLE+FA H  R ++NTEDV L A R+  L   ++   
Subjt:  MEEDDSTAELLRDRF--RLSAI------CIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFC

Query:  HELKTKEPQSERKRKKAPKKEDKSAIHITDA
         ++     + + K+KK  + E+++++   +A
Subjt:  HELKTKEPQSERKRKKAPKKEDKSAIHITDA

Q6NRI8 Centromere protein S2.6e-0628.57Show/hide
Query:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK
        M  G EE  S  + L+         + +  A    ++ S   +  ++E+ F+  +  AKDLE+FA H  R ++N +DV L A R+  L A +S    E+ 
Subjt:  METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELK

Query:  TKEPQSERKRKK
            + + K+KK
Subjt:  TKEPQSERKRKK

Q8N2Z9 Centromere protein S1.8e-0735.48Show/hide
Query:  MEEDDSTAELLRDRF--RLSAI------CIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFC
        MEE+  T E  R  +  RL A       C+ E  A    M+ S   +  ++EL F+  +  AKDLE+FA H  R ++NTEDV L A R+  L   ++   
Subjt:  MEEDDSTAELLRDRF--RLSAI------CIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFC

Query:  HELKTKEPQSERKRKKAPKKEDKS
         E+   +   ERK +K  K ED S
Subjt:  HELKTKEPQSERKRKKAPKKEDKS

Q9FI55 Protein MHF1 homolog6.4e-3770.69Show/hide
Query:  EDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQS
        E+ S  +L+RDRFRLSAI IAEAEAK++GMEI  PV+ CVA+LAFKY + +AKDLELFAHH GRK VN +DV+LSAHRN++LAASL S C+ELK KEPQS
Subjt:  EDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQS

Query:  ERKRKK-APKKEDKSA
        ERKRKK + KKEDK++
Subjt:  ERKRKK-APKKEDKSA

Arabidopsis top hitse value%identityAlignment
AT5G50930.1 Histone superfamily protein4.5e-3870.69Show/hide
Query:  EDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQS
        E+ S  +L+RDRFRLSAI IAEAEAK++GMEI  PV+ CVA+LAFKY + +AKDLELFAHH GRK VN +DV+LSAHRN++LAASL S C+ELK KEPQS
Subjt:  EDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQS

Query:  ERKRKK-APKKEDKSA
        ERKRKK + KKEDK++
Subjt:  ERKRKK-APKKEDKSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACTGGGATGGAAGAAGACGACTCCACGGCCGAACTCTTGAGGGACCGATTCCGACTGTCCGCCATTTGTATCGCTGAAGCTGAAGCGAAGAGAAGCGGGATGGA
AATCTCTGTACCGGTGATGACTTGTGTCGCTGAGTTAGCGTTCAAATATACAAAACAGTTGGCAAAGGACCTTGAGTTATTTGCTCATCATGGTGGTCGGAAATCTGTGA
ATACGGAAGACGTCATACTCTCAGCTCATAGAAACGAGCATCTGGCTGCCTCATTGTCGTCCTTCTGCCATGAACTAAAGACAAAAGAACCTCAAAGTGAGAGAAAGCGG
AAAAAGGCACCGAAAAAGGAAGATAAAAGTGCAATACATATTACTGACGCATAA
mRNA sequenceShow/hide mRNA sequence
AGTGAACTCTGTGTCCAGAAGGCTCTGCAATGGAGACTGGGATGGAAGAAGACGACTCCACGGCCGAACTCTTGAGGGACCGATTCCGACTGTCCGCCATTTGTATCGCT
GAAGCTGAAGCGAAGAGAAGCGGGATGGAAATCTCTGTACCGGTGATGACTTGTGTCGCTGAGTTAGCGTTCAAATATACAAAACAGTTGGCAAAGGACCTTGAGTTATT
TGCTCATCATGGTGGTCGGAAATCTGTGAATACGGAAGACGTCATACTCTCAGCTCATAGAAACGAGCATCTGGCTGCCTCATTGTCGTCCTTCTGCCATGAACTAAAGA
CAAAAGAACCTCAAAGTGAGAGAAAGCGGAAAAAGGCACCGAAAAAGGAAGATAAAAGTGCAATACATATTACTGACGCATAATCACATCTCCCGGTGGGCAGGTCTCTA
GTTAGTAAGGGTACCAAGTAATGACAATATTATATGATTCTTTTCCTGTTTCTAGGTAAACTCATTAGTAATGAATTATGAAATACCATGGGCCTACGAGATATTACTCT
GATTTAAAGGATAAGCTTCTGCATCATGTGTGTTCATTAAAGTGTTTCCAAACGCAGGAAACGTAGCTTTTGGTTTGTTTTAGGTATTTGATATTGTCGAAGCATGAGGT
CAATGTTTAATGGTGGATTTCGTTGGAAACATGAAATGAGCTGAACAGTTAAAAAGCTTGAGAAATTGTTCTATGTGAATTTACAAAACATTTATAAGATTTAAACTTTT
AGTTAACTGCACAACATTTTGATCATGTGAAGCATATTTGCATCTGCTCGGTGTAAATATAATAGCCTAGTTCTGCACAGATACAAGAATGGTTCGGTTCATTCTTCTTT
ATTTTAATTTATTTTCTATGGAAGAAAGTACCCATCTGCCTCCAAGAATTGAAACGGGGGTAGGGACGAAGTTGGGTGTGTTTGAACAAAATGGATCAAAACACAGGTGA
AATTATCTGGTCTTTTCGAAAAAATGGAGGATTCATACAGTTGATTATCAAGCTATGTCCTTAAAATTGCTAACACAATTCCCTTTGCTAGTATTCCCATTTTGAAACAT
GGAATAGCTACACAAGCCGCAGCGTCAAATTCTGATAATCATCTCAAAAGCAGGTCAGTGCATCTAATATTTCAGACGATGTTACTTTCGAGCGAGTCATTTTTCTTGAA
CAACTGATAACTCAGCAGCTACTTGTTTCACAGAAATCTATGTCGCACCATTGAAACCTACTGAATCCAATAGTATTGCTTTTATCTGCTCAGGATGGACATCTTGGCCT
TCGCTGCATTGCTGAAAATATGTACTCTTTATCAGTCACAAGTCATAAGGATGGGTCACGTCATCAAGTAAACTGAAAGGGTTTCACCTCTGCTCGGAAAATGTCCATGG
CAAAACCATTGAAGCAGCTAATCACAGCTTGCTGGATGTCTAAGCCAAGATTATCTAATGCCCTAACTGAGGAGAGCAAGAGACCAGGTCGACGACCACAGAACATGTGT
ATGTTTACTGCCCGACCTTCTCGTACCCTAACTTCGACCTTATTAACACAGTAGTATCATCAATAATTTCTTCAGATGACAGGGTTGTAGCAAATAATATAATTCCAAAT
GCAATAATCATGCGATGGACAAAGGAAAGTTGTCCCAAGATAAGGA
Protein sequenceShow/hide protein sequence
METGMEEDDSTAELLRDRFRLSAICIAEAEAKRSGMEISVPVMTCVAELAFKYTKQLAKDLELFAHHGGRKSVNTEDVILSAHRNEHLAASLSSFCHELKTKEPQSERKR
KKAPKKEDKSAIHITDA