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Carg06856 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06856
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPatatin
Genome locationCarg_Chr18:1699587..1700033
RNA-Seq ExpressionCarg06856
SyntenyCarg06856
Gene Ontology termsGO:0000162 - tryptophan biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573198.1 hypothetical protein SDJN03_27085, partial [Cucurbita argyrosperma subsp. sororia]9.8e-79100Show/hide
Query:  MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCS
        MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCS
Subjt:  MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCS

Query:  SSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM
        SSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM
Subjt:  SSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM

KAG6584077.1 hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia]7.6e-3167.26Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-------------MNRISGFG
        TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSSSPPTFW S+MSWRRKKKR+   FVPK             MN+ISGF 
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-------------MNRISGFG

Query:  YTILRNDFHSFHM
        YTIL+N+FHS HM
Subjt:  YTILRNDFHSFHM

KAG7012374.1 hypothetical protein SDJN02_25126, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-79100Show/hide
Query:  MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCS
        MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCS
Subjt:  MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCS

Query:  SSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM
        SSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM
Subjt:  SSPPTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM

KAG7019678.1 hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-3465.41Show/hide
Query:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-
        H KP STTF +S +KMAA  TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSS PPTFW S+MSWRRKKKR+   FVPK 
Subjt:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-

Query:  ------------MNRISGFGYTILRNDFHSFHM
                    MN+ISGF YTIL+N+FHS HM
Subjt:  ------------MNRISGFGYTILRNDFHSFHM

XP_016898893.1 PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]7.9e-2864.29Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK------------MNRISGFGY
        TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQSIMSWRRKKK T   F+ K            MN+ISG  Y
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK------------MNRISGFGY

Query:  TILRNDFHSFHM
        TIL+NDFHS H+
Subjt:  TILRNDFHSFHM

TrEMBL top hitse value%identityAlignment
A0A0A0LX43 Uncharacterized protein1.2e-2961.36Show/hide
Query:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-
        H KP++ TF++S   MAA   APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQS+MSWRRK K T   FV K 
Subjt:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK-

Query:  -----------MNRISGFGYTILRNDFHSFHM
                   MN+ISG  YTIL+NDFHS HM
Subjt:  -----------MNRISGFGYTILRNDFHSFHM

A0A1S4DSE9 uncharacterized protein LOC1034854093.8e-2864.29Show/hide
Query:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK------------MNRISGFGY
        TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQSIMSWRRKKK T   F+ K            MN+ISG  Y
Subjt:  TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPK------------MNRISGFGY

Query:  TILRNDFHSFHM
        TIL+NDFHS H+
Subjt:  TILRNDFHSFHM

A0A314Z3X1 Uncharacterized protein3.0e-1746.21Show/hide
Query:  LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSS-SHRTQRPDMASSSCS-SSPPTFWQSIMSWRRKKKR------
        + YK SSTT  +  +       AP+AIGTRGTVGSLV+ EI+Y++K+EL+R   SSSS   + Q  DM SSSC+ SS P+FW  IM+W+RKK+R      
Subjt:  LHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSS-SHRTQRPDMASSSCS-SSPPTFWQSIMSWRRKKKR------

Query:  TGICFVPK------MNRISGFGYTILRNDFHS
        + IC   K      +N I GF Y IL++D ++
Subjt:  TGICFVPK------MNRISGFGYTILRNDFHS

A0A5A7UTL1 Uncharacterized protein9.7e-2467Show/hide
Query:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPKM
        H KP++ TF++S   MAA  TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQSIMSWRRKKK T   F+ KM
Subjt:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRTGICFVPKM

A0A6J1CHB1 uncharacterized protein LOC1110108622.5e-2759.4Show/hide
Query:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSS-CSSSPPTFWQSIMSWRRKKKRTGICFVPK
        H KP STTF +  ++MAA  TAPVAIGTRGTVGSLVK EIDY+AKIE ERC  +          DMASSS  SSSPPTFW ++MSWRRKKKR G  F+ K
Subjt:  HYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSS-CSSSPPTFWQSIMSWRRKKKRTGICFVPK

Query:  ------------MNRISGFGYTILRNDFHSFHM
                    +N+ISGF YTIL+NDF+S HM
Subjt:  ------------MNRISGFGYTILRNDFHSFHM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21780.1 unknown protein1.0e-0937.17Show/hide
Query:  VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT---GICFVPKM---------N
        + AP+AIGTRGT+GSLV+ EIDY+            R  +S  + +  ++ D +SS   S     W S   WR+KK++T   G  F P M         N
Subjt:  VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMSWRRKKKRT---GICFVPKM---------N

Query:  RISGFGYTILRND
        R+ GF Y IL++D
Subjt:  RISGFGYTILRND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATT
CTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGA
TTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATA
ATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCA
CATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTATATAAAGATCAAAAAGGAGATGGCTTAGACTCAAAGCAAGCAATCCCAGGACCCCAAAAAGCCTCTTTGAATTTACATTATAAACCCAGCAGCACCACATT
CTGGGAATCTCGTGACAAAATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGA
TTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATA
ATGTCGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCGAAAATGAATAGGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCA
CATGTAG
Protein sequenceShow/hide protein sequence
MALYKDQKGDGLDSKQAIPGPQKASLNLHYKPSSTTFWESRDKMAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSI
MSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM