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Carg06872 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06872
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationCarg_Chr20:539066..540359
RNA-Seq ExpressionCarg06872
SyntenyCarg06872
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570425.1 hypothetical protein SDJN03_29340, partial [Cucurbita argyrosperma subsp. sororia]8.2e-60100Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVGQKKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
XP_022943522.1 dendritic arbor reduction protein 1 isoform X1 [Cucurbita moschata]5.3e-5999.16Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVGQKKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
XP_022943523.1 dendritic arbor reduction protein 1 isoform X2 [Cucurbita moschata]5.0e-5798.32Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVG KKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
XP_023512837.1 dendritic arbor reduction protein 1 isoform X1 [Cucurbita pepo subsp. pepo]3.1e-5999.16Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHR QHHHQRHHPHHGQLPVDGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVGQKKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
XP_023512838.1 dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]2.9e-5798.32Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHR QHHHQRHHPHHGQLPVDGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVG KKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
TrEMBL top hitse value%identityAlignment
A0A0A0KK09 AvrRpt-cleavage domain-containing protein1.9e-3060.47Show/hide
Query:  RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHR-HRHEHRQQHHH-----------QRHHPH
        +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM   DKH RH +HR HRH HR  HHH             HH H
Subjt:  RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHR-HRHEHRQQHHH-----------QRHHPH

Query:  HGQLPV-DGAVVGQKKKKILSCMSCCIKP
        H Q P  D +V  +KKKKIL+ ++CCI+P
Subjt:  HGQLPV-DGAVVGQKKKKILSCMSCCIKP
A0A6J1FT95 dendritic arbor reduction protein 1 isoform X12.6e-5999.16Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVGQKKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
A0A6J1FX29 dendritic arbor reduction protein 1 isoform X22.4e-5798.32Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPV GA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVG KKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
A0A6J1JCC4 dendritic arbor reduction protein 1 isoform X25.0e-5594.96Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQH HR EHR QHHH RHHPHHGQLP DGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVG KKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
A0A6J1JEB9 dendritic arbor reduction protein 1 isoform X15.4e-5795.8Show/hide
Query:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA
        MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQH HR EHR QHHH RHHPHHGQLP DGA
Subjt:  MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGA

Query:  VVGQKKKKILSCMSCCIKP
        VVGQKKKKILSCMSCCIKP
Subjt:  VVGQKKKKILSCMSCCIKP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09960.1 FUNCTIONS IN: molecular_function unknown1.4e-0433.6Show/hide
Query:  DSRTENR--WKSVPEFGGWDNNTPDA-SNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELM-----AIADKHDRHHQHRHRHEHRQQHHHQRHHPHHG
        D R E    W SVP+FG WD        +YS+ F++ R  +KQ K D +   RASLGNE+EL+     A +       Q  ++ E    HHHQ H P   
Subjt:  DSRTENR--WKSVPEFGGWDNNTPDA-SNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELM-----AIADKHDRHHQHRHRHEHRQQHHHQRHHPHHG

Query:  QLPVDGAVVGQKKKKILSCMSCCIK
                    ++ + SC +CC+K
Subjt:  QLPVDGAVVGQKKKKILSCMSCCIK
AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein5.6e-1444.63Show/hide
Query:  MDSRTEN-RWKSVPEFGGWDNNTP-DASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVD
        MD R EN  W  VP+FGGWD   P DA+NYSVVFS+ARAN+KQ K  +   + +SLG+E+ELM    ++  H Q  HRHE +               PV 
Subjt:  MDSRTEN-RWKSVPEFGGWDNNTP-DASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVD

Query:  GAVVGQKKKKILSCMSCCIKP
              KKK+IL+ ++CCI+P
Subjt:  GAVVGQKKKKILSCMSCCIKP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGC
TAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATC
GCCACCGTCACGAACACCGACAGCAACATCACCACCAACGCCACCACCCGCATCATGGTCAATTACCAGTGGATGGCGCTGTTGTCGGGCAGAAGAAAAAGAAGATTCTG
TCCTGCATGAGTTGTTGTATCAAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTCTTGCATTTATTTTCTATTCGGTGCTACAGTTCTCCCACCCCATCCTCCCCTCTTCAGGCCGTATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATT
TGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCTAATAAGAAACAGCAAAAGACCGATTTAACTGAGTTCAAAAGAG
CCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCGCCACCGTCACGAACACCGACAGCAACATCACCACCAACGCCAC
CACCCGCATCATGGTCAATTACCAGTGGATGGCGCTGTTGTCGGGCAGAAGAAAAAGAAGATTCTGTCCTGCATGAGTTGTTGTATCAAGCCTTGATATGAGATAAAGAA
GGCAACCAACTTCGCTATGTTTTAGTGATATCATGCTGTTTTTCTGGATCTTCTTTTTACTGGCATGTGTAAATGTAGCGAGACATGTTCATCATATGGAAAATAAATGC
GTCAATTTCCCCCTCCCTGCGTCATTTTGTGTAGGTTCTTTAGCTTATAAAACATGGAACCTTGTAATATATTCATTTCTTCATGGAAAAAACCAGATGAATACACTATG
CAATAACATTATATTTTGTCCTTTTCGACGTTGCTTTGGATCTACAGGGTGGACACAGCCCTTGCAATCTCTGATATTCTGTACATGTCAACTTTCCACCATTTGTTCTA
CCAGTCTTCACAGT
Protein sequenceShow/hide protein sequence
MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHRHRHEHRQQHHHQRHHPHHGQLPVDGAVVGQKKKKIL
SCMSCCIKP