; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06898 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06898
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationCarg_Chr20:389425..389763
RNA-Seq ExpressionCarg06898
SyntenyCarg06898
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570402.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.4e-46100Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]1.1e-2978.76Show/hide
Query:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP
        MASM++TASFLP TAT QPS   A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAP
Subjt:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]7.8e-4498.21Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPS  AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_023512156.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo]3.2e-4599.11Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPSAAAAAARRALFV KASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]2.9e-3080.53Show/hide
Query:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP
        MASM++TASFLP TA  QPS    AARRAL V KASTS+ A    SN NLEIKNVKVE+ QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAP
Subjt:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein3.4e-2977.88Show/hide
Query:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP
        MASM++TASFLP TAT QPS   + ARR L V KASTS  A    SN N+E+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAP
Subjt:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic5.3e-3078.76Show/hide
Query:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP
        MASM++TASFLP TAT QPS   A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAP
Subjt:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

A0A5A7TID9 Photosystem II 5 kDa protein5.3e-3078.76Show/hide
Query:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP
        MASM++TASFLP TAT QPS   A  RRAL V KASTS    +  SN NLE+KNVKVES QGRRELVAAAVTVAAAT AKAAMADEP RGS EAKQKYAP
Subjt:  MASMSITASFLPFTAT-QPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAP

Query:  ICVTMPTARICRK
        ICVTMPTARICRK
Subjt:  ICVTMPTARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic3.8e-4498.21Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPS  AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic3.8e-4498.21Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MASMSITASFLPFTATQPS  AAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICRK
        CVTMPTARICRK
Subjt:  CVTMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic2.2e-0941.96Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAP
        MAS+++ +SFL  +   P+   +A RR + + KA             N+ I   +   + GRREL  A    AA + AK AMAD EP RG+ EAK+KY+ 
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMAD-EPPRGSAEAKQKYAP

Query:  ICVTMPTARICR
        +CVT PTARICR
Subjt:  ICVTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic3.2e-0843.24Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI
        MAS+++T SFL  T      +    +R L V  A+  A       +        K E + GRRE++ AA   A  + A  A A EP RGSAEAK+ YAP+
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPI

Query:  CVTMPTARICR
        CVTMPTARICR
Subjt:  CVTMPTARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic6.9e-1146.02Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYA
        MASM++TA+F P  A  PSA      R L V +AST      S++  +LE+K  +  S+  RR+L+  A   A  + AK AMA  +EP RG+  AK+KYA
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYA

Query:  PICVTMPTARICR
         +CVTMPTA+ICR
Subjt:  PICVTMPTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein2.3e-1448.67Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESS-QGRRELVAAAVTVAAATFAKAAMA-DEPPRGSAEAKQKYA
        MASM++T+SFLP  +  P+  ++ +RR+L V KAS S   T         ++N K E S + RR+LV  A   A  + AK AMA DEP RG+  AK+KYA
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESS-QGRRELVAAAVTVAAATFAKAAMA-DEPPRGSAEAKQKYA

Query:  PICVTMPTARICR
        P+CVTMPTA+ICR
Subjt:  PICVTMPTARICR

AT3G21055.1 photosystem II subunit T4.9e-1246.02Show/hide
Query:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYA
        MASM++TA+F P  A  PSA      R L V +AST      S++  +LE+K  +  S+  RR+L+  A   A  + AK AMA  +EP RG+  AK+KYA
Subjt:  MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMA--DEPPRGSAEAKQKYA

Query:  PICVTMPTARICR
         +CVTMPTA+ICR
Subjt:  PICVTMPTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACAGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTC
TGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAG
CTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGC
CGCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACAGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTC
TGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAG
CTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGC
CGCAAATGA
Protein sequenceShow/hide protein sequence
MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARIC
RK