; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg06924 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06924
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLipoxygenase
Genome locationCarg_Chr20:277280..277818
RNA-Seq ExpressionCarg06924
SyntenyCarg06924
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0031408 - oxylipin biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000907 - Lipoxygenase
IPR001024 - PLAT/LH2 domain
IPR036392 - PLAT/LH2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570372.1 Lipoxygenase 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.5e-6299.22Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKI+VPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

KAG7010249.1 Lipoxygenase 7, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-67100Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTKVGTSIIRIL
        NSVTFSCTSWVQPKNLIPDQRRIFFSTKVGTSIIRIL
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTKVGTSIIRIL

XP_022943469.1 linoleate 13S-lipoxygenase 2-1, chloroplastic-like isoform X1 [Cucurbita moschata]1.3e-6196.88Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDI+AVVTV+PKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKI+VPRGFGEIGAVIIELKDNSTERFIDTVS+ANSSSQ
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

XP_022943470.1 lipoxygenase 7, chloroplastic-like isoform X2 [Cucurbita moschata]1.3e-6196.88Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDI+AVVTV+PKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKI+VPRGFGEIGAVIIELKDNSTERFIDTVS+ANSSSQ
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

XP_022985897.1 linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Cucurbita maxima]3.0e-5892.19Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDIIAV+TVKPK NEKFPSDDTLSLKFASSDLD DGQQKPL+GGVATIQNESAEEY YVAKI+VP+G+GEIGAVIIELK+NSTERFIDTVSIANSSS 
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

TrEMBL top hitse value%identityAlignment
A0A0A0KX68 Uncharacterized protein6.4e-4674.07Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVA-TIQNES-AEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSS
        MA +IIA+V+V PK NE FPSDDTL L FASSDLD DGQQKPLIGGVA  I+NES AE+Y YVAKI+VP+GFGEIGAVI+ELKD+S+E+FIDTV +AN +
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVA-TIQNES-AEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSS

Query:  SQNSVTFSCTSWVQPKNLIPDQRRIFFSTKVGTSI
        S N++TFSCTSWVQPK+LIPDQRR+FFSTK    I
Subjt:  SQNSVTFSCTSWVQPKNLIPDQRRIFFSTKVGTSI

A0A5D3DDX5 Lipoxygenase9.3e-4575.38Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVA-TIQNESAEE-YTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSS
        MA +IIA+ +V PK NEKFPSDDTL L+FAS DLDADG  KPLIGG A  I+NES E+ Y YVAKIEVP+GFGEIGAVI+ELKD+S E+FIDTV +AN +
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVA-TIQNESAEE-YTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSS

Query:  SQNSVTFSCTSWVQPKNLIPDQRRIFFSTK
        S N++TFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  SQNSVTFSCTSWVQPKNLIPDQRRIFFSTK

A0A6J1FUE7 Lipoxygenase6.4e-6296.88Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDI+AVVTV+PKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKI+VPRGFGEIGAVIIELKDNSTERFIDTVS+ANSSSQ
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

A0A6J1FXU8 Lipoxygenase6.4e-6296.88Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDI+AVVTV+PKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKI+VPRGFGEIGAVIIELKDNSTERFIDTVS+ANSSSQ
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

A0A6J1J654 Lipoxygenase1.5e-5892.19Show/hide
Query:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ
        MAVDIIAV+TVKPK NEKFPSDDTLSLKFASSDLD DGQQKPL+GGVATIQNESAEEY YVAKI+VP+G+GEIGAVIIELK+NSTERFIDTVSIANSSS 
Subjt:  MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQ

Query:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK
        NSVTFSCTSWVQPKNLIPDQRRIFFSTK
Subjt:  NSVTFSCTSWVQPKNLIPDQRRIFFSTK

SwissProt top hitse value%identityAlignment
P38419 Lipoxygenase 7, chloroplastic3.0e-0832.17Show/hide
Query:  AVDIIAVVTVKPKFNEKFPSD--------DTLSLKFASSDLDA-DGQQKPLIGGVA-TIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDT
        AV + AV T+K    E              +LSL+  SS+LDA  G++K  +   A  + ++     TY A  +VP GFG IGA+I+   +   E F++ 
Subjt:  AVDIIAVVTVKPKFNEKFPSD--------DTLSLKFASSDLDA-DGQQKPLIGGVA-TIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDT

Query:  VSIANSSSQNSVT---FSCTSWVQPKNLIPD---QRRIFFSTK
        +++  S    + T     C SWVQPK++  +    +RIFF+ K
Subjt:  VSIANSSSQNSVT---FSCTSWVQPKNLIPD---QRRIFFSTK

P93184 Lipoxygenase 2.1, chloroplastic4.8e-0633.01Show/hide
Query:  LSLKFASSDLDAD-GQQKPLIGGVATIQNESAEEY-TYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSWVQPKNLIPDQRR
        L +   SS+LD   GQ++  I G         +E+  Y A  +VP  FG IGAV +    +S     D         +++VTF C SW+ P +  PD +R
Subjt:  LSLKFASSDLDAD-GQQKPLIGGVATIQNESAEEY-TYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSWVQPKNLIPDQRR

Query:  IFF
        +FF
Subjt:  IFF

Q84YK8 Probable lipoxygenase 8, chloroplastic4.8e-0634.23Show/hide
Query:  TLSLKFASSDLDA-DGQQKPLIGGVA-TIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSI-ANSSSQNS--VTFSCTSWVQPKNLIP
        +L L+  SS+L+A  G++K  +   A  + ++     TY A  +VP GFG IGAV++   +   E F++ +++ A   + NS  +   C SWVQPK+ I 
Subjt:  TLSLKFASSDLDA-DGQQKPLIGGVA-TIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSI-ANSSSQNS--VTFSCTSWVQPKNLIP

Query:  D---QRRIFFS
        +    +RIFF+
Subjt:  D---QRRIFFS

Q8GSM2 Lipoxygenase 2.3, chloroplastic1.6e-0635.92Show/hide
Query:  TLSLKFASSDLD-ADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFI-DTVSIANSSSQNSVTFSCTSWVQPKNLIPDQR
        TL L+  SS+LD   G+++  + G A   + + +E TY AK+ VP  FG +GAV++E  ++  E FI D   I       ++TF   SWV  K   P+ R
Subjt:  TLSLKFASSDLD-ADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFI-DTVSIANSSSQNSVTFSCTSWVQPKNLIPDQR

Query:  RIF
          F
Subjt:  RIF

R9WS04 Lipoxygenase 2, chloroplastic1.0e-0838.46Show/hide
Query:  LKFASSDLDADGQQKPLIGGVATIQ--NESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSWVQPKNLIPDQRRIF
        L+  SSDLD+ G++K  +   AT    ++ ++ Y Y  + EVP  FGEIGAV+++      ER  D   + N      VTF+C SW+  K   PD +RIF
Subjt:  LKFASSDLDADGQQKPLIGGVATIQ--NESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSWVQPKNLIPDQRRIF

Query:  FSTK
        F  K
Subjt:  FSTK

Arabidopsis top hitse value%identityAlignment
AT3G45140.1 lipoxygenase 21.9e-0536.49Show/hide
Query:  AEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSWVQPKNLIPDQRRIFFSTK
        A +  Y  + E+P  FG +GA+ I+   N   R +    +       S+TF+C SWV PK++ P  +RIFFS K
Subjt:  AEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSWVQPKNLIPDQRRIFFSTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTGATATCATCGCAGTTGTTACCGTCAAACCCAAATTTAATGAAAAGTTTCCTTCCGACGACACCCTCTCTCTCAAGTTTGCTAGCTCCGATTTGGATGCTGA
TGGACAGCAAAAGCCATTGATCGGAGGTGTGGCGACAATACAGAATGAATCGGCGGAGGAGTACACGTACGTGGCCAAAATTGAAGTTCCCAGAGGATTTGGGGAAATTG
GAGCAGTGATCATTGAACTGAAAGACAACTCCACGGAGAGGTTTATCGACACTGTTTCTATTGCCAACTCATCATCTCAGAACTCAGTTACGTTCAGCTGCACCTCATGG
GTTCAGCCCAAAAATTTGATCCCTGACCAGCGCAGGATCTTCTTTTCCACTAAGGTTGGTACATCCATCATAAGGATATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTGATATCATCGCAGTTGTTACCGTCAAACCCAAATTTAATGAAAAGTTTCCTTCCGACGACACCCTCTCTCTCAAGTTTGCTAGCTCCGATTTGGATGCTGA
TGGACAGCAAAAGCCATTGATCGGAGGTGTGGCGACAATACAGAATGAATCGGCGGAGGAGTACACGTACGTGGCCAAAATTGAAGTTCCCAGAGGATTTGGGGAAATTG
GAGCAGTGATCATTGAACTGAAAGACAACTCCACGGAGAGGTTTATCGACACTGTTTCTATTGCCAACTCATCATCTCAGAACTCAGTTACGTTCAGCTGCACCTCATGG
GTTCAGCCCAAAAATTTGATCCCTGACCAGCGCAGGATCTTCTTTTCCACTAAGGTTGGTACATCCATCATAAGGATATTATGA
Protein sequenceShow/hide protein sequence
MAVDIIAVVTVKPKFNEKFPSDDTLSLKFASSDLDADGQQKPLIGGVATIQNESAEEYTYVAKIEVPRGFGEIGAVIIELKDNSTERFIDTVSIANSSSQNSVTFSCTSW
VQPKNLIPDQRRIFFSTKVGTSIIRIL