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Carg06952 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg06952
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChlororespiratory reduction 42
Genome locationCarg_Chr20:115348..116103
RNA-Seq ExpressionCarg06952
SyntenyCarg06952
Gene Ontology termsGO:0010258 - NADH dehydrogenase complex (plastoquinone) assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
InterPro domainsIPR021495 - Protein of unknown function DUF3148


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570328.1 hypothetical protein SDJN03_29243, partial [Cucurbita argyrosperma subsp. sororia]5.6e-65100Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

XP_022944245.1 uncharacterized protein LOC111448751 [Cucurbita moschata]2.8e-6499.25Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MATSLSSATAIPRPSIGIG VSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

XP_022985824.1 uncharacterized protein LOC111483753 [Cucurbita maxima]9.9e-6296.27Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MATSLSSATAIPRPSIGIG V+SISSFN+SNSLSTRSQPRS VKCESSASAADPTPPAKS KLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

XP_023513105.1 uncharacterized protein LOC111777646 [Cucurbita pepo subsp. pepo]1.2e-6298.51Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MATSLSSATAIPRPSIGIG VSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKS KLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

XP_038900819.1 uncharacterized protein LOC120087887 [Benincasa hispida]3.5e-5185.82Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MA SLS ATAI RPSI I  +SSISS NVS+SLS RSQPR LVKCESSASAAD TPP  S KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVW VRLKVGTYLIDG+YFRPL+LDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

TrEMBL top hitse value%identityAlignment
A0A0A0L1Q6 Uncharacterized protein3.3e-4780.74Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV
        MA  L   T   RP+I I  ++SISSFNVSN+L+TRSQPRS+VKCESSAS AD  T P KS KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDV
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV

Query:  GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        GRIVSRKPKDVW VRLKVGTYLIDGRYFR LELDQ
Subjt:  GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

A0A1S3BMX2 uncharacterized protein LOC1034915962.9e-5185.93Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV
        MA S S  T I RPS  I T++SISSFNVSN+LSTRSQPRS+VKCESSASAAD  TPPAKS KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDV
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV

Query:  GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        GRIVSRKPKDVW VRLKVGTYLIDGRYFR LELDQ
Subjt:  GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

A0A5A7T9E1 Chlororespiratory reduction 422.9e-5185.93Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV
        MA S S  T I RPS  I T++SISSFNVSN+LSTRSQPRS+VKCESSASAAD  TPPAKS KLEIGSPVIV+EAPKMIKTAASVPCLRVNSGIINPGDV
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAAD-PTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDV

Query:  GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        GRIVSRKPKDVW VRLKVGTYLIDGRYFR LELDQ
Subjt:  GRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

A0A6J1FYJ7 uncharacterized protein LOC1114487511.3e-6499.25Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MATSLSSATAIPRPSIGIG VSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

A0A6J1JEC4 uncharacterized protein LOC1114837534.8e-6296.27Show/hide
Query:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
        MATSLSSATAIPRPSIGIG V+SISSFN+SNSLSTRSQPRS VKCESSASAADPTPPAKS KLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG
Subjt:  MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVG

Query:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
Subjt:  RIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G20935.1 unknown protein4.8e-3064.21Show/hide
Query:  RSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ
        R  V+C      A+  P  KS KL++GSP+I+VEAPK+IKTAAS+PCLR NSG++ PGDVGRIVSRKPKD+W VRL +GTYL+DG+YF+ LELD+
Subjt:  RSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDVWGVRLKVGTYLIDGRYFRPLELDQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCACCGTCAGTTCCATCTCTTCGTTCAACGTCTCCAACAGCTTAAGCACTCGGTC
TCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTTGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGG
CTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGAATCGTGTCAAGAAAACCGAAGGACGTG
TGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTTCTCTTTCTTCTGCTACAGCAATTCCACGCCCAAGCATCGGCATCGGCACCGTCAGTTCCATCTCTTCGTTCAACGTCTCCAACAGCTTAAGCACTCGGTC
TCAACCGCGAAGCCTCGTGAAGTGCGAATCAAGTGCATCGGCAGCAGACCCCACGCCGCCGGCAAAGAGTTGGAAACTCGAGATCGGCTCCCCCGTTATCGTAGTCGAGG
CTCCCAAAATGATAAAGACCGCAGCCTCGGTTCCATGCCTCAGGGTCAATTCCGGCATAATCAACCCCGGCGACGTTGGCAGAATCGTGTCAAGAAAACCGAAGGACGTG
TGGGGCGTGCGGCTTAAAGTCGGGACTTACCTCATAGATGGAAGGTATTTTAGACCATTAGAGCTGGATCAATGAGCCCGTCGTGTTGAATGTTGTTGATCGAAACATAG
TTCAATAATTAAGGCCTTATGATCTAATCCAAAAGATCAAATGTTACAAATCTCACCTTCAATTAATTAAAAAAACACTCGTGCATGATTGAACTAGACACTGAATTTTA
CTGCTTCGGTATCACTTTATCGATGATGAGTTTACTCAAATATCCCTAATTATATAACTAGTCTTCTCTTGGAGTTGATATACGTGAGGTTAGGAGAGGTG
Protein sequenceShow/hide protein sequence
MATSLSSATAIPRPSIGIGTVSSISSFNVSNSLSTRSQPRSLVKCESSASAADPTPPAKSWKLEIGSPVIVVEAPKMIKTAASVPCLRVNSGIINPGDVGRIVSRKPKDV
WGVRLKVGTYLIDGRYFRPLELDQ