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Carg07001 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07001
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCarg_Chr01:4019577..4022990
RNA-Seq ExpressionCarg07001
SyntenyCarg07001
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037056.1 hypothetical protein SDJN02_00677, partial [Cucurbita argyrosperma subsp. argyrosperma]8.4e-78100Show/hide
Query:  MDPLQKLGELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLEEANT
        MDPLQKLGELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLEEANT
Subjt:  MDPLQKLGELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLEEANT

Query:  SYKARAYAHQRDVDFNICDLVMGSCSHRDGTVQNKNKGRKSILKNLGQN
        SYKARAYAHQRDVDFNICDLVMGSCSHRDGTVQNKNKGRKSILKNLGQN
Subjt:  SYKARAYAHQRDVDFNICDLVMGSCSHRDGTVQNKNKGRKSILKNLGQN
RVW43684.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]8.0e-1252.38Show/hide
Query:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
        ++L IK    +KLY NNK  INIAHNPIQH++TKHI++ RHFIKEKLE+R+VYMSY+P       + L  G    +   L F L
Subjt:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
RVW77031.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-1150Show/hide
Query:  ELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLE
        +L+++L IK    +KLY +NKS INIAHNPIQH++TKHI++ RHFIKEKLE+ +V MSY+P      ++ L  G    +  +L F LE
Subjt:  ELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLE
RVW82013.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-1152.38Show/hide
Query:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
        ++L IK    +KLY +NKS INIAHNPIQH++TKHI++ RHFIKEKLEK +V MSY+P      ++ L  G    + K+L F L
Subjt:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
RVW95020.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-1151.76Show/hide
Query:  KEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
        +++L IK    +KLY +NKS INIAHNPIQHN+TKHI++ RHFIKEKLE+ +V MSY+P     V++ L  G    +  +L F L
Subjt:  KEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
TrEMBL top hitse value%identityAlignment
A0A438E7R9 Retrovirus-related Pol polyprotein from transposon RE13.9e-1252.38Show/hide
Query:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
        ++L IK    +KLY NNK  INIAHNPIQH++TKHI++ RHFIKEKLE+R+VYMSY+P       + L  G    +   L F L
Subjt:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
A0A438GXY4 Retrovirus-related Pol polyprotein from transposon RE15.0e-1250Show/hide
Query:  ELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLE
        +L+++L IK    +KLY +NKS INIAHNPIQH++TKHI++ RHFIKEKLE+ +V MSY+P      ++ L  G    +  +L F LE
Subjt:  ELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLE
A0A438HC24 Retrovirus-related Pol polyprotein from transposon RE15.0e-1252.38Show/hide
Query:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
        ++L IK    +KLY +NKS INIAHNPIQH++TKHI++ RHFIKEKLEK +V MSY+P      ++ L  G    + K+L F L
Subjt:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
A0A438IE37 Retrovirus-related Pol polyprotein from transposon RE15.0e-1251.76Show/hide
Query:  KEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
        +++L IK    +KLY +NKS INIAHNPIQHN+TKHI++ RHFIKEKLE+ +V MSY+P     V++ L  G    +  +L F L
Subjt:  KEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHL
A0A438KI60 Retrovirus-related Pol polyprotein from transposon RE18.6e-1250.59Show/hide
Query:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLE
        ++L IK    +KLY +NKS INIAHNPIQH++TKHI++ RHFIKEKLE+ +V MSY+P  +   ++ L  G    +  +L F LE
Subjt:  EELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLE
SwissProt top hitse value%identityAlignment
P04146 Copia protein2.2e-0430.59Show/hide
Query:  LKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEV---ELMVGRVEELHKEL
        L   + IK +  IK+Y +N+  I+IA+NP  H + KHI +  HF +E+++  ++ + Y+P      ++    L   R  EL  +L
Subjt:  LKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEV---ELMVGRVEELHKEL
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCACTTCAGAAATTGGGAGAGTTAAAAGAAGAACTTGCGATTAAGAGAAAATATTCGATAAAGTTATACAACAACAACAAATCAGACATCAATATTGCTCATAA
TCCTATCCAACATAATAAAACAAAGCATATTAAAGTCGCTCGGCATTTTATTAAAGAAAAATTAGAGAAGAGGATAGTATACATGAGTTATATGCCTCACAGCTTCAACT
TCGTTGAGGTTGAGCTCATGGTTGGCCGGGTTGAAGAATTACATAAAGAGCTTTGTTTCCATCTTGAGGAGGCTAACACTTCCTATAAGGCTCGAGCATATGCACATCAG
CGTGATGTGGATTTCAACATTTGTGACCTTGTCATGGGTTCTTGTTCACATCGGGATGGTACTGTTCAGAATAAAAACAAAGGAAGGAAGTCAATTCTTAAGAACCTTGG
CCAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCACTTCAGAAATTGGGAGAGTTAAAAGAAGAACTTGCGATTAAGAGAAAATATTCGATAAAGTTATACAACAACAACAAATCAGACATCAATATTGCTCATAA
TCCTATCCAACATAATAAAACAAAGCATATTAAAGTCGCTCGGCATTTTATTAAAGAAAAATTAGAGAAGAGGATAGTATACATGAGTTATATGCCTCACAGCTTCAACT
TCGTTGAGGTTGAGCTCATGGTTGGCCGGGTTGAAGAATTACATAAAGAGCTTTGTTTCCATCTTGAGGAGGCTAACACTTCCTATAAGGCTCGAGCATATGCACATCAG
CGTGATGTGGATTTCAACATTTGTGACCTTGTCATGGGTTCTTGTTCACATCGGGATGGTACTGTTCAGAATAAAAACAAAGGAAGGAAGTCAATTCTTAAGAACCTTGG
CCAAAATTGA
Protein sequenceShow/hide protein sequence
MDPLQKLGELKEELAIKRKYSIKLYNNNKSDINIAHNPIQHNKTKHIKVARHFIKEKLEKRIVYMSYMPHSFNFVEVELMVGRVEELHKELCFHLEEANTSYKARAYAHQ
RDVDFNICDLVMGSCSHRDGTVQNKNKGRKSILKNLGQN