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Carg07021 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07021
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationCarg_Chr01:3872522..3873133
RNA-Seq ExpressionCarg07021
SyntenyCarg07021
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583322.1 Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3081.18Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
KAG6607363.1 Structure-specific endonuclease subunit SLX1, partial [Cucurbita argyrosperma subsp. sororia]9.4e-3498.67Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRC
        MRKRKEKP+ISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRC
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRC
KAG7037035.1 Structure-specific endonuclease subunit SLX1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-40100Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
XP_022970648.1 uncharacterized protein LOC111469571 isoform X1 [Cucurbita maxima]4.8e-3081.18Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
XP_023519404.1 uncharacterized protein LOC111782823 isoform X2 [Cucurbita pepo subsp. pepo]4.8e-3081.18Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
TrEMBL top hitse value%identityAlignment
A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog3.4e-2980Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MRKRKEKP+I + T    +EEKEDDE+E  GN+ NGFFSCYLLAS CP FKGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
A0A6J1HKB9 Structure-specific endonuclease subunit SLX1 homolog2.0e-2980Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ N FFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
A0A6J1HMD6 Structure-specific endonuclease subunit SLX1 homolog2.0e-2980Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ N FFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
A0A6J1HZQ2 Structure-specific endonuclease subunit SLX1 homolog2.3e-3081.18Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog2.3e-3081.18Show/hide
Query:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        MR+RKEKP+I +  AVA EE+KEDDEDE  GN+ NGFFSCYLLAS CP +KGHTYIGFTVNPKRRIRQHNGEIRCG WRTKRKRP
Subjt:  MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
SwissProt top hitse value%identityAlignment
A7STV9 Structure-specific endonuclease subunit SLX1 homolog3.4e-1055.56Show/hide
Query:  DDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEI-RCGTWRTKRKRP
        DD   GS     GF   YLL  V P FKGHTYIG+TVNP RRI+QHNG + + G ++T RK+P
Subjt:  DDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEI-RCGTWRTKRKRP
P0CN80 Structure-specific endonuclease subunit SLX18.4e-0953.06Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        F++CYLL S        TY+G T +P RRIRQHNGE++ G W T R RP
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
P0CN81 Structure-specific endonuclease subunit SLX18.4e-0953.06Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        F++CYLL S        TY+G T +P RRIRQHNGE++ G W T R RP
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
Q4CTY5 Structure-specific endonuclease subunit SLX1 homolog 21.1e-0859.57Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRK
        F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  G WRTKR+
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRK
Q4D7L5 Structure-specific endonuclease subunit SLX1 homolog 11.1e-0859.57Show/hide
Query:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRK
        F   YLL S+ P   G  YIG+TV+P RR+RQHNGEI  G WRTKR+
Subjt:  FFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRK
Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal9.1e-1968.33Show/hide
Query:  EDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP
        ED  +G    GFF+CYLL S+ P  KG TYIGFTVNP+RRIRQHNGEI  G WRTK+KRP
Subjt:  EDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAGGAAAGAGAAACCGGATATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACAAATCGAACGGCTT
CTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTA
GATGCGGTACGTGGCGTACTAAGAGGAAGAGACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGAGGAAAGAGAAACCGGATATCTCTGAAGCTACGGCGGTTGCAGAGGAGGAGGAGAAGGAAGACGATGAAGATGAAGGAAGCGGCAACAAATCGAACGGCTT
CTTTTCATGCTATCTCTTGGCCTCTGTCTGCCCTTGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCTAAACGCAGAATCAGGCAGCACAATGGTGAAATTA
GATGCGGTACGTGGCGTACTAAGAGGAAGAGACCATGA
Protein sequenceShow/hide protein sequence
MRKRKEKPDISEATAVAEEEEKEDDEDEGSGNKSNGFFSCYLLASVCPCFKGHTYIGFTVNPKRRIRQHNGEIRCGTWRTKRKRP