; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg07032 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07032
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionU2 small nuclear ribonucleoprotein B
Genome locationCarg_Chr01:3802142..3804901
RNA-Seq ExpressionCarg07032
SyntenyCarg07032
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137370.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucumis sativus]2.0e-11896.54Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAE+KRR EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_008457301.1 PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis melo]1.3e-11796.1Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAE+KRR EE HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_022154903.1 U2 small nuclear ribonucleoprotein B'' 2-like [Momordica charantia]1.3e-11795.67Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAERKRR E++HQSAMPNG T ENG SNATFRHANPSAPEA PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_022949507.1 U2 small nuclear ribonucleoprotein B'' 2-like [Cucurbita moschata]1.7e-122100Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

XP_023525708.1 U2 small nuclear ribonucleoprotein B'' 2-like isoform X1 [Cucurbita pepo subsp. pepo]3.9e-12299.57Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAERKRRT+ETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

TrEMBL top hitse value%identityAlignment
A0A0A0LPT7 Uncharacterized protein9.6e-11996.54Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDC+AKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAE+KRR EETHQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A5D3BF51 U2 small nuclear ribonucleoprotein B'' 2-like6.2e-11896.1Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFY+KPMRIQYAKTKSDCVAKADG+
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAE+KRR EE HQSAMPNG T ENGGSNATFRHANPSA EATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A6J1DLJ9 U2 small nuclear ribonucleoprotein B'' 2-like6.2e-11895.67Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQTIY+KNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDCVAKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAERKRR E++HQSAMPNG T ENG SNATFRHANPSAPEA PNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A6J1GC84 U2 small nuclear ribonucleoprotein B'' 2-like8.4e-123100Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

A0A6J1KA04 U2 small nuclear ribonucleoprotein B'' 2-like8.4e-123100Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

SwissProt top hitse value%identityAlignment
A2Y0J7 U1 small nuclear ribonucleoprotein A5.3e-6658.55Show/hide
Query:  PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREK
        PPN TIYI NLNEK+K EELK+SL A+FSQ+G+ILDV+A KT + +GQAWV F +V +A+ A++ MQ+FPF++KPMRIQYAKTKSD +AKADG+FVPRE+
Subjt:  PPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREK

Query:  KKKQEEKAERKRRTEETHQ-SAMPNGATAENGGSNATFRHANPSA-------PE-ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAF
        +K+ +EK E+K++ E+ H  S +  G  A  G   A      P A       PE   PNNILF++NLPHET+ MMLQ+LF QYPGF+EVRM+EAKPGIAF
Subjt:  KKKQEEKAERKRRTEETHQ-SAMPNGATAENGGSNATFRHANPSA-------PE-ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAF

Query:  VEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        VE+ D+ Q++ AM  LQGFKI   + M IS+AKK
Subjt:  VEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

B8AM21 U2 small nuclear ribonucleoprotein B''2.7e-8673.82Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+QYAKTKSDC+A  DGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEK-AERKRRTEETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFV
          P+EK+KKQEEK AE+KRR EE  QS  PN A   NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFV
Subjt:  FVPREKKKKQEEK-AERKRRTEETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFV

Query:  EFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        E+EDD QS +AMQALQGFKI P +PMAIS+AKK
Subjt:  EFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

O22922 U2 small nuclear ribonucleoprotein B''5.8e-8972.34Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIA
        FVP++KK+KQEEK ERKR   +   T      NG +A NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIA
Subjt:  FVPREKKKKQEEKAERKRRTEE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIA

Query:  FVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        FVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Subjt:  FVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Q10MR0 U2 small nuclear ribonucleoprotein B''6.0e-8673.39Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML GDIPPNQT+Y++NLNEKVKKEELKRSLYAL SQYGRILDVVALKTP+LRGQAWV FSE+TAA+NA R +Q F FY K MR+QYAKT+SDC+A  DGS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEK-AERKRRTEETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFV
          P+EK+KKQEEK AE+KRR EE  QS  PN A   NG G  A+        P A PNNILFI+NLP ET+SMMLQ+LFQQYPGFREVRMIEAKPGIAFV
Subjt:  FVPREKKKKQEEK-AERKRRTEETHQSAMPNGATAENG-GSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFV

Query:  EFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        E+EDD QS +AMQALQGFKI P +PMAIS+AKK
Subjt:  EFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Q8H1S6 U2 small nuclear ribonucleoprotein B'' 23.5e-9477.16Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVE
        FVP+EKK KQEEK ERKR  EET Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVE

Query:  FEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        +EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  FEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

Arabidopsis top hitse value%identityAlignment
AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.5e-9577.16Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVE
        FVP+EKK KQEEK ERKR  EET Q +MPNGAT +NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVE

Query:  FEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        +EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  FEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT1G06960.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-9476.62Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML  DIPPNQ+IYIK++NEK+KKEELKRSLY LFSQ+GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GS
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF
        FVP+EKK KQEEK ERKR  EET Q +MPNGAT +NG           + P   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+
Subjt:  FVPREKKKKQEEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEF

Query:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  EDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT1G06960.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-7776.14Show/hide
Query:  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAE
        ++GR+LDVVALKTP+LRGQAWV F+EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSD V KA+GSFVP+EKK KQEEK ERKR  EET Q +MPNGAT +
Subjt:  QYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQEEKAERKRRTEETHQSAMPNGATAE

Query:  NGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        NG     F+   PS  +   PNNILFI NLP ET+SMMLQ+LF+QYPGF+E+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKI PQ+PM +SFAKK
Subjt:  NGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT2G30260.1 U2 small nuclear ribonucleoprotein B4.1e-9072.34Show/hide
Query:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS
        ML  DIPPNQ+IYI+NLNE++KKEELKRSLY LFSQ+GRILDVVALKTP+LRGQAWV FSEVTAA +AVRQMQNFPFYDKPMR+QYAK KSDC+AKA+G+
Subjt:  MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGS

Query:  FVPREKKKKQEEKAERKRRTEE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIA
        FVP++KK+KQEEK ERKR   +   T      NG +A NG    +F+   PS  E   PNNILFI+NLPHET+SMMLQ+LF+QYPGF+E+RMI+AKPGIA
Subjt:  FVPREKKKKQEEKAERKRRTEE---THQSAMPNGATAENGGSNATFRHANPSAPEA-TPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIA

Query:  FVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        FVE+EDDVQ+S+AMQ LQGFKI PQ+PM ISFAKK
Subjt:  FVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK

AT2G47580.1 spliceosomal protein U1A8.4e-6758.58Show/hide
Query:  DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPR
        ++ PNQTIYI NLNEKVK +ELK+SL A+FSQ+G+IL+++A KT + +GQAWV F    +AS A+ +M NFPFYDK MRIQYAKTKSD VAKADG+FVPR
Subjt:  DIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPR

Query:  EKKKKQEEKAERKRRTEETH---QSAMP-NGATAENGGSNATFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAK
        EK+K+ EEK   K++ ++ H   Q  MP N A     G+              P+ PE  A PNNILF++NLPHET+ M+LQ+LF QY GF+EVRMIEAK
Subjt:  EKKKKQEEKAERKRRTEETH---QSAMP-NGATAENGGSNATFRHA------NPSAPE--ATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAK

Query:  PGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK
        PGIAFVEF D++QS++AMQ LQGFKI  Q+ M I++AKK
Subjt:  PGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATA
TGGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAA
ACTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAA
GAGGAAAAAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAA
TCCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCA
GGGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCC
CAACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA
mRNA sequenceShow/hide mRNA sequence
TGCTTCCGCCGAGTCTCCTTCGTCCTGCTACATTCGAAGAACCAGATTTGTGTTCGGTGCTCCGTGATTCTCTGTAAGCCGAAGGCGCTGAACGTGAACGCGAACCACCA
TGTTATTGGGGGATATACCACCTAACCAGACCATATACATTAAGAATCTCAATGAGAAGGTCAAGAAAGAAGAATTGAAGAGATCCCTCTATGCTTTGTTTTCTCAATAT
GGAAGGATCCTTGACGTTGTTGCCTTGAAGACACCGAGGCTTCGAGGGCAAGCATGGGTTGCATTTAGTGAAGTGACTGCAGCTAGCAATGCTGTGCGGCAGATGCAAAA
CTTCCCATTCTATGATAAACCTATGCGAATTCAATATGCCAAAACCAAATCAGATTGTGTTGCTAAAGCTGATGGAAGCTTTGTGCCAAGGGAGAAGAAAAAGAAGCAAG
AGGAAAAAGCTGAGAGAAAGCGACGTACTGAAGAAACACACCAGTCTGCGATGCCCAATGGAGCAACCGCTGAGAATGGAGGTTCAAATGCCACATTCCGTCATGCAAAT
CCAAGCGCTCCAGAAGCTACTCCAAACAACATACTATTTATTGAGAATTTGCCTCATGAAACTTCGAGTATGATGTTGCAAGTCCTCTTCCAACAATATCCTGGATTCAG
GGAAGTCCGAATGATCGAAGCAAAGCCGGGTATTGCTTTTGTTGAGTTTGAAGATGATGTTCAATCCTCTATGGCGATGCAGGCTCTTCAGGGCTTTAAAATTGATCCCC
AACATCCCATGGCTATCTCTTTTGCAAAGAAGTAA
Protein sequenceShow/hide protein sequence
MLLGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGSFVPREKKKKQ
EEKAERKRRTEETHQSAMPNGATAENGGSNATFRHANPSAPEATPNNILFIENLPHETSSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDP
QHPMAISFAKK