CuGenDBv2

Gene ID	Carg07066
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PHD finger-like domain-containing protein 5B
Genome location	Carg_Chr01:3604567..3605740
RNA-Seq Expression	Carg07066
Synteny	Carg07066
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0000502 - proteasome complex (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domains	IPR005345 - PHF5-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAB5520576.1 hypothetical protein DKX38_024895 [Salix brachista]

1.0e-57

69.38

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E--HMYVYADENSRLIKAR----AGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCML
        E     +   E   L+ A      GA+      C+   L +     ++ +AS  +  C++
Subjt:  E--HMYVYADENSRLIKAR----AGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCML

KAG6792993.1 hypothetical protein POTOM_002161 [Populus tomentosa]

3.9e-57

90.52

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHM-YVYADENSRLIK
        E +  V AD  S  ++
Subjt:  EHM-YVYADENSRLIK

KAG7036993.1 PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-92

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHMYVYADENSRLIKARAGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF
        EHMYVYADENSRLIKARAGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF
Subjt:  EHMYVYADENSRLIKARAGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF

PPD86829.1 hypothetical protein GOBAR_DD16226 [Gossypium barbadense]

5.1e-57

99.03

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHM
        E M
Subjt:  EHM

TKS07855.1 Zinc finger CCCH domain-containing protein 30 [Populus alba]

1.8e-57

99.03

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHM
        EH+
Subjt:  EHM

TrEMBL top hits

e value

%identity

Alignment

A0A4U5QH41 Zinc finger CCCH domain-containing protein 30

8.5e-58

99.03

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHM
        EH+
Subjt:  EHM

A0A5N5JPF0 Uncharacterized protein

5.0e-58

69.38

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E--HMYVYADENSRLIKAR----AGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCML
        E     +   E   L+ A      GA+      C+   L +     ++ +AS  +  C++
Subjt:  E--HMYVYADENSRLIKAR----AGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCML

A0A7N2LD10 Uncharacterized protein

1.1e-57

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EH
        EH
Subjt:  EH

A0A7N2R2H0 Uncharacterized protein

6.5e-58

99.03

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHM
        EH+
Subjt:  EHM

M8CB49 Zinc finger CCCH domain-containing protein 30

5.5e-57

69.75

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  EHMYVYADENSRLIKARAGAI---HDGFSDCLALTLC-IESEPSQLR--IASPTVEQCMLKP
        E          +  + R GA+   +D  +    +++C +ES    +R  I+  +  Q  L+P
Subjt:  EHMYVYADENSRLIKARAGAI---HDGFSDCLALTLC-IESEPSQLR--IASPTVEQCMLKP

SwissProt top hits

e value

%identity

Alignment

P0DI19 PHD finger-like domain-containing protein 5A

3.3e-59

99.01

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

P83870 PHD finger-like domain-containing protein 5A

3.8e-55

91.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

P83871 PHD finger-like domain-containing protein 5A

3.8e-55

91.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

Q0WMV8 PHD finger-like domain-containing protein 5B

3.3e-59

99.01

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

Q7RTV0 PHD finger-like domain-containing protein 5A

3.8e-55

91.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

Arabidopsis top hits

e value

%identity

Alignment

AT1G07170.1 PHF5-like protein

2.4e-60

99.01

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

AT1G07170.2 PHF5-like protein

2.4e-60

99.01

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

AT1G07170.3 PHF5-like protein

2.4e-60

99.01

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

AT2G30000.1 PHF5-like protein

2.4e-60

99.01

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  E
        E
Subjt:  E

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATTGCCATTGGCCGACTTTGTGAGAAGTGTGATGGAAAGTGTGTAATCTGTGATTCTTATGT
CCGCCCCTGTACGCTTGTTCGTGTTTGTGATGAATGCAATTACGGATCTTTCCAAGGCCGTTGTGTTATCTGTGGAGGAGTAGGAATCTCAGATGCCTACTACTGCAAAG
AGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGGAGTGCAAAAACAGACTTATTCTATGAACACATGTATGTATATGCTGATGAGAAC
AGTCGTTTGATCAAGGCCAGGGCCGGTGCCATTCACGACGGATTTAGCGATTGTTTGGCTCTCACTCTCTGTATTGAGAGTGAACCAAGCCAACTTAGGATTGCGTCGCC
TACAGTTGAGCAATGTATGCTCAAGCCTCTGGTCTCGTTTTGA

mRNA sequence

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Protein sequence

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MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYEHMYVYADEN
SRLIKARAGAIHDGFSDCLALTLCIESEPSQLRIASPTVEQCMLKPLVSF

Carg07066 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome