; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg07079 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07079
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L44
Genome locationCarg_Chr17:7686932..7688127
RNA-Seq ExpressionCarg07079
SyntenyCarg07079
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDP14595.1 unnamed protein product [Coffea canephora]3.5e-5292.86Show/hide
Query:  IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI
        + +  +K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEI
Subjt:  IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI

Query:  GGDKKGKGTSLF
        GGDKKGKGTSLF
Subjt:  GGDKKGKGTSLF

KAF4385822.1 hypothetical protein F8388_010378 [Cannabis sativa]4.6e-5298.13Show/hide
Query:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

KAG6606901.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5298.15Show/hide
Query:  SAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
        SA  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
Subjt:  SAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

KAG7014271.1 60S ribosomal protein L44 [Cucurbita argyrosperma subsp. argyrosperma]8.1e-57100Show/hide
Query:  MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFE
        MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFE
Subjt:  MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFE

Query:  IGGDKKGKGTSLF
        IGGDKKGKGTSLF
Subjt:  IGGDKKGKGTSLF

KAG7036604.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-5298.15Show/hide
Query:  SAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
        SA  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
Subjt:  SAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

TrEMBL top hitse value%identityAlignment
A0A068V1D2 Uncharacterized protein1.7e-5292.86Show/hide
Query:  IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI
        + +  +K VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEI
Subjt:  IFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI

Query:  GGDKKGKGTSLF
        GGDKKGKGTSLF
Subjt:  GGDKKGKGTSLF

A0A6J1KSV1 60S ribosomal protein L442.9e-52100Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

A0A7J6GSC6 Uncharacterized protein2.2e-5298.13Show/hide
Query:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

A0A7J6HQ78 Uncharacterized protein2.2e-5298.13Show/hide
Query:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

A0A803QLA4 Uncharacterized protein2.2e-5298.13Show/hide
Query:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  AKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

SwissProt top hitse value%identityAlignment
A8PCG3 60S ribosomal protein L441.0e-4177.67Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSL
         +L
Subjt:  TSL

O23290 60S ribosomal protein L36a5.3e-5193.27Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

O59870 60S ribosomal protein L443.4e-4278.64Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSL
         ++
Subjt:  TSL

Q96499 60S ribosomal protein L446.6e-5498.08Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

Q9UWE4 60S ribosomal protein L441.0e-4177.67Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK KG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSL
         +L
Subjt:  TSL

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein3.7e-5293.27Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein3.7e-5293.27Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein9.9e-4592.39Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAA
GAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGA
AGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACT
TCTCTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
GTTTCTTCTCTGAATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGG
TTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAG
GCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAA
GGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGTCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTGGTTGCTCTGAT
ACTTGGGTACACTTCTACACGTTGAATTTTGTTTAATGTATCACTTTGTTTTGCTGTCAAACTAATTTTCATTCCATATCTGGCTGTCTAGTGAATGCTCATTTAGTTGT
CAAACGAATTTGAGTTTTTCTCGCGCTTTGCTATACTACACGACACGAGTGACGAATGATATTGAAGTAGACAGAAGCAGTTGGCTACTCTGTTATTACCGGGGAACTCT
TGGTGAGGGACATGCTAGCGGATTTACCATGTAGGAGTATGATGATAAGACGACTCATATTATTACTGGGATTACTTCCGAATTTAAGAGAGCAAAAGGAGAATAGAATT
ACCGAATATCTCTTTTCCGATCTTTTCAATTCTTGATAGATTGATACGGTAGGGAAGCACTTTTCGACATAAATCGTCTCATCCACAAGGTAGAACTATGGTTAATTAGG
TGGCAATTTGCAGGCGCTTCCTTATGAAATGAGCTAATTGTGGCAGTAATGTTTTTAAAGAAATTGATGTTCA
Protein sequenceShow/hide protein sequence
MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGT
SLF