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Carg07081 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07081
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPhotosystem II stability/assembly factor
Genome locationCarg_Chr17:7692489..7695010
RNA-Seq ExpressionCarg07081
SyntenyCarg07081
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR028203 - Photosynthesis system II assembly factor Ycf48/Hcf136-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575719.1 Photosystem II stability/assembly factor, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4397.83Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

KAG6593273.1 Photosystem II stability/assembly factor, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.8e-5084.3Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK----------L
        MGWRADGGLWLLVRGGGLFLSKGTGISE+FEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLKTTNGG+TWTRDKAADNIAANLYSVK          L
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK----------L

Query:  QNQILYDACDRNFVSLNHSCI
        QNQILYDACD NFVSLN++ +
Subjt:  QNQILYDACDRNFVSLNHSCI

KAG7014273.1 Photosystem II stability/assembly factor, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-62100Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQNQILYDACD
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQNQILYDACD
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQNQILYDACD

Query:  RNFVSLNHSCILALDDGMRY
        RNFVSLNHSCILALDDGMRY
Subjt:  RNFVSLNHSCILALDDGMRY

XP_022991485.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita maxima]1.9e-4397.83Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

XP_023548135.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita pepo subsp. pepo]1.9e-4397.83Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

TrEMBL top hitse value%identityAlignment
A0A0A0K5Y1 Photosystem II stability/assembly factor1.7e-4294.57Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLKTTNGGR+WTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

A0A1S3CFV0 Photosystem II stability/assembly factor9.9e-4393.55Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQNQ
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLKTTNGGR+WTRDKAADNIAANLYSVK  N+
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQNQ

A0A5D3CGP8 Photosystem II stability/assembly factor1.7e-4294.57Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSGVLLKTTNGGR+WTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

A0A6J1GMA2 Photosystem II stability/assembly factor9.0e-4497.83Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

A0A6J1JT27 Photosystem II stability/assembly factor9.0e-4497.83Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN
        MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK  N
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQN

SwissProt top hitse value%identityAlignment
O82660 Photosystem II stability/assembly factor HCF136, chloroplastic1.1e-4187.64Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK
        MGWRADGGLWLLVRGGGL+LSKGTGI+EEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSG+LL+T NGG++W RDKAADNIAANLY+VK
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK

P73069 Ycf48-like protein3.8e-1546.07Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRG-FGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSV
        MG+  DG LWLL RGG L  S      E  + +  Q +G +G+LD+ FR+ EE W AG SG LL + +GG+TW +D   ++I ANLY V
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRG-FGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSV

Q3MC08 Ycf48-like protein2.7e-1342.7Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFE-EVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSV
        MG+  D GLWLL RGG +  S  T   E  + + P  +  +G+LD+ +R+  E W  GGSG LL +T+GG+TW +D+  + +AAN Y V
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFE-EVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSV

Q5Z5A8 Photosystem II stability/assembly factor HCF136, chloroplastic1.6e-3771.17Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTG----------------------ISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAA
        MGWRADGGLWLLVRGGGLFLSKG+G                      I+E+FEE  VQSRGFGILDVG+RS++EAWAAGGSGVLLKTTNGG+TW RDKAA
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTG----------------------ISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAA

Query:  DNIAANLYSVK
        DNIAANLYSVK
Subjt:  DNIAANLYSVK

Q8YQI3 Ycf48-like protein2.7e-1342.7Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFE-EVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSV
        MG+  D GLWLL RGG +  S      E  + E P  +  +G+LD+ +R+  E W  GGSG LL +T+GG+TW +D+  + +AAN Y V
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFE-EVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSV

Arabidopsis top hitse value%identityAlignment
AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136)7.5e-4387.64Show/hide
Query:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK
        MGWRADGGLWLLVRGGGL+LSKGTGI+EEFEEVPVQSRGFGILDVG+RS+EEAWAAGGSG+LL+T NGG++W RDKAADNIAANLY+VK
Subjt:  MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGATCAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAG
CCGAGGTTTTGGCATATTAGATGTTGGTTTTCGTTCACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAGGACATGGACCC
GTGATAAAGCAGCTGACAATATTGCAGCCAACCTTTACTCTGTAAAGTTACAGAATCAGATTCTATATGATGCTTGCGATCGAAATTTTGTATCATTAAATCATAGCTGC
ATTCTTGCTTTGGATGATGGGATGAGGTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGAGGAGGACTTTTTCTTAGTAAAGGGACAGGGATCAGTGAGGAGTTTGAAGAAGTTCCAGTTCAAAG
CCGAGGTTTTGGCATATTAGATGTTGGTTTTCGTTCACAGGAAGAGGCTTGGGCAGCTGGAGGAAGTGGAGTACTTCTGAAAACTACAAATGGTGGCAGGACATGGACCC
GTGATAAAGCAGCTGACAATATTGCAGCCAACCTTTACTCTGTAAAGTTACAGAATCAGATTCTATATGATGCTTGCGATCGAAATTTTGTATCATTAAATCATAGCTGC
ATTCTTGCTTTGGATGATGGGATGAGGTACTAATGCTACCGAGTTTCGTATCTTTCCTCGTTTTTTGCATTTCTGAAGACGCTTTCATTCGAAAGAGTCAATTTCGTATA
TAGTTTTCATTCTTGTTAATATTTGTAATTTAAATGTATACTTGTTCATATGCCCATTCAACAATGATGAATTTGGAAGTTGTAGATGTTTTTTTGTCCTTTGATTTTTA
TAGAACATTACTGTACATTTCAATTCCCCAATTATAACAATGATATAAACTCAGATTCGTGGCCAATGGAACTTTTAAGATTATATTTGATTT
Protein sequenceShow/hide protein sequence
MGWRADGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGFRSQEEAWAAGGSGVLLKTTNGGRTWTRDKAADNIAANLYSVKLQNQILYDACDRNFVSLNHSC
ILALDDGMRY