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Carg07134 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07134
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationCarg_Chr17:7964579..7967996
RNA-Seq ExpressionCarg07134
SyntenyCarg07134
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003195 - Transcription initiation factor IID, subunit 13
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]2.0e-6296.32Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_022953440.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata]2.8e-6499.26Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]9.7e-65100Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_023547584.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo]2.2e-6499.26Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTG+SQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]1.5e-6296.32Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

TrEMBL top hitse value%identityAlignment
A0A1S3BRL0 transcription initiation factor TFIID subunit 138.3e-6296.3Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 138.3e-6296.3Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 139.8e-6396.32Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

A0A6J1GN10 transcription initiation factor TFIID subunit 131.4e-6499.26Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPS GSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

A0A6J1JWI2 transcription initiation factor TFIID subunit 134.7e-65100Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDEKVDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 133.9e-2459.57Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 138.9e-3765.08Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 136.3e-3865.08Show/hide
Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTTGTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAGA
TTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGACCCACGAAAACTGAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTG
AAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGGTGGATCAGTAG
mRNA sequenceShow/hide mRNA sequence
TTTTTATTTTTAATGCCCCAGCTTTTTGGAATTTCCCGATTGAACACCTTTGGCGGCAGAAGAGTTTAAGCTCCGGCGAATCTCATGCGGTGACTCGGATTCTCCATCTC
CGATAATTTTCGCCTTGATTATTGTGGGAAGATCGTGAAGATGAATAATCCATCAGCTGGATCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTT
TTAAGCGCAAACGAGGGGTTTTTCAAAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACGCCAATCCCCTTCCAGAATCTGTAGCACTTATGGAGGACATAGTT
GTGGAGTACATAACTGAACTGGTGTATAAAGCCCAGGAGATTGGATCCAAAAGGGGAAAACTATCTGTAGAAGACTTTTTGTATCTAATGCGCAAGGACCCACGAAAACT
GAACCGTTCTACGGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGATGAGAAGG
TGGATCAGTAGAGTTTACAACAGATACCAAAGTAATGATAGGAAGACATTTGGGGATCATTTGTTGCAGCACGGACAAAGTTCATGTCAATATGGTCAACCGACAGGACA
GGCATTTGAAGCTTACCTTTTTCTGCAGCCCAAAGGGTCCATGGTAGGCAGGGAAAAGCAAAGCAATTAGCTTTAGCCCCAACCTACTTGTAAAGGTGGGGTCTTCCCTT
CCCTTCCCTATCCTACGCCTTCTTTTGGAATTAATGAAATAAACACCTCTTTTCTTTTTAATTTTTCTGGCTTACCTTATCTGTGATTAGTAAGTGTGCTTCTGACTTGG
CTACCTTCAATTTGTTAGAATCTCCTAATCTGAGAGAGCAAACAACTTAGGTATTAGTTCTGAACTAATTTTTAGGAAGTTTGTTCTCTGCAGGTCAAAACAAGTGTTAT
ATATACCTACCGAAGGTTGAAGGTTATATACTATGGGTCGTTATTTTCTCTCTTGCTTGCTTATATAATGTCTCTTTCAAAAATCTCTGAAGGTTGAAGGTTATATACTA
T
Protein sequenceShow/hide protein sequence
MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDANPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEEL
KQARRAFEIDEDKLKKAFEEDEKVDQ