CuGenDBv2

Gene ID	Carg07177
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleolar protein 16
Genome location	Carg_Chr17:8138998..8140030
RNA-Seq Expression	Carg07177
Synteny	Carg07177
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014368.1 hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-104

100

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

1.5e-103

99.48

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRR GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

2.8e-102

98.45

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

1.1e-101

97.93

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYH CLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

5.2e-96

92.23

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP WD+KA VIHNYKSFGV+SNPNLLSVRSRTDHIVESD LQVPPS PPSD+P
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPL+PLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSM4 Nucleolar protein 16

7.5e-93

90.16

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A5A7VLA5 Nucleolar protein 16

7.5e-93

90.16

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYK+SR KV+VGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDP WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESD LQV    PPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPL+PLTT+QRVHVG+LIEKYGDD++RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1DE29 Nucleolar protein 16

3.7e-92

90.21

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS D
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQV-PPSLPPSDD

Query:  PDSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKR+ GKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1GRW5 Nucleolar protein 16

7.3e-104

99.48

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKRR GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

1.4e-102

98.45

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP
        MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQVPPSLPPSDDP
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDP

Query:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
        DSVLDSSGSDVEEDDLKTALGKKR+ GKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR
Subjt:  DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

7.8e-66

62.76

Show/hide

Query:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSL-PPSDD
        M RSRRKY+ SRAKV+V LPK+NPN+FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH+++ D L VPP + PP+DD
Subjt:  MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSL-PPSDD

Query:  P---DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILT
        P   +     SGS++EEDDLKTALGK+R+ GKSAPL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KLC RY    DKNP++++
Subjt:  P---DSVLDSSGSDVEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGGCAAAAGTGCAGGTCGGCTTGCCCAAAAGGAACCCCAATGTCTTCAAGCCATCTTTCTGTATGCCGCCGAAGCT
CCGCTCCTTGCTTGCCGAACAATTTGAAGAAGATCCCGCGTGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAATCCTAATTTGCTCA
GTGTTCGTTCCCGAACGGATCACATCGTTGAGAGCGACTTTCTCCAGGTCCCGCCGTCATTGCCGCCTTCCGATGACCCTGATTCGGTGCTTGATTCTTCCGGTAGCGAT
GTGGAAGAGGACGATTTGAAAACAGCCCTGGGAAAGAAGCGCAGATATGGGAAATCTGCACCTCTAAAACCTTTGACGACGATTCAGCGTGTTCATGTCGGTAGGCTAAT
CGAGAAGTATGGAGATGATCACGAGAGGATGTTCATGGACACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATACCACAGTTGTT
TAGATAAGAATCCATTGATATTGACTCGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSD
VEEDDLKTALGKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILTR

Carg07177 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome