; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg07224 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07224
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description39S ribosomal protein L46, mitochondrial-like isoform X2
Genome locationCarg_Chr17:8402806..8406143
RNA-Seq ExpressionCarg07224
SyntenyCarg07224
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR040008 - 39S ribosomal protein L46, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014415.1 hypothetical protein SDJN02_24592 [Cucurbita argyrosperma subsp. argyrosperma]9.6e-55100Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYA
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYA
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYA

Query:  VFLHNFFRIG
        VFLHNFFRIG
Subjt:  VFLHNFFRIG
XP_022954202.1 39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita moschata]1.6e-4698.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQL KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
XP_022992543.1 39S ribosomal protein L46, mitochondrial-like isoform X3 [Cucurbita maxima]1.6e-4698.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
XP_023547487.1 39S ribosomal protein L46, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]5.6e-47100Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
XP_023547488.1 39S ribosomal protein L46, mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]5.6e-47100Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
TrEMBL top hitse value%identityAlignment
A0A6J1GQE8 39S ribosomal protein L46, mitochondrial-like isoform X17.9e-4798.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQL KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
A0A6J1GQF1 39S ribosomal protein L46, mitochondrial-like isoform X27.9e-4798.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQL KRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
A0A6J1JQ58 39S ribosomal protein L46, mitochondrial-like isoform X27.9e-4798.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
A0A6J1JTU9 54S ribosomal protein L17, mitochondrial-like isoform X17.9e-4798.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
A0A6J1JZI9 39S ribosomal protein L46, mitochondrial-like isoform X37.9e-4798.98Show/hide
Query:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDE LDKANARGKGDYQIDYVPAPRITEADKTNDRK
Subjt:  MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G14620.1 decoy4.0e-3579.55Show/hide
Query:  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        L  RRGF T+S+KIVASVLFERL VVIPK DP VYAFQEFKF WQQQ+RRRYPDE LD A  R KG+YQ+DYVPAPRITEADK NDRK
Subjt:  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
AT1G14620.2 decoy4.0e-3579.55Show/hide
Query:  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK
        L  RRGF T+S+KIVASVLFERL VVIPK DP VYAFQEFKF WQQQ+RRRYPDE LD A  R KG+YQ+DYVPAPRITEADK NDRK
Subjt:  LAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCGACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGAT
TCCGAAGATTGACCCCGTGGTGTATGCATTTCAGGAGTTCAAGTTTAGGTGGCAACAGCAATATCGGCGCAGATATCCTGATGAACTTTTAGATAAAGCTAATGCTAGGG
GAAAAGGTGACTACCAAATTGATTATGTTCCAGCGCCCCGGATTACTGAAGCTGACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAACTTTTTTAGAATTGGT
TGA
mRNA sequenceShow/hide mRNA sequence
AGGAGATTCATCAAAGCGCAGCCCTCGCCGTCGACGGTCACTCTCCCATTCTCAGAATGCAGAGATCGTTTAGTTTAGCCAGTCAGCTCGCGAAGAGGCGAGGTTTTTCG
ACGAATTCCGAGAAAATTGTGGCGTCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGGTGTATGCATTTCAGGAGTTCAAGTTTAGGTGGCA
ACAGCAATATCGGCGCAGATATCCTGATGAACTTTTAGATAAAGCTAATGCTAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCGCCCCGGATTACTGAAGCTG
ACAAAACAAATGATAGGAAGTATGCAGTCTTTCTTCATAACTTTTTTAGAATTGGTTGATTGAAGGTTTCCTTATCAATCTATGAGCTCTTGTTCTTGTTCATGCTGAAT
TATCTTCATTGTTTTGACTTACGAGGCTATCCTTGTGTTTCTTCCTTTACTCTTCTAGATCATCTGTTTCCTCTTGTTTCTGTTAGTTGACTACCATAAGTTGTGAGGTT
ATTCTTTTATAGTTGTGATTATGTAATGCTCTTGATTCATGTACAACGCTTTTATATCCAAGCGTTGCTGCAGTGTCATGCATATCAGGAGGATCCTGCTACTTTTAGGT
GCTTTCAACTCATTTACTTTAGTGCTCTTACATCTATAATACCACGGTTCTACTCGATTCATGATGATAAATGCAACTTGTTTTATTCCTGGGGAAACCTCTTTCATTTG
GTTCATAAGACAATTTTTGGATATCATGGTATATCGAATAAATGCTGAATTATCATCACCTGGTTACTATATCAGGCCATCGGCGTATTTCTTATTCTAGAATACAGCGT
CTCTTGTTTTTTCTCATTGTTGTTTTAGACAGTCTATCTGATCCAAGTCATTAATTTTCCAGATTCTAAGCTCAAAAGAGAGGTTTAAATTCTGCTTACTTGAATTGTCC
CCTTTCCTTTTAGGTCACTGCAGAGAGCACTTGACAGAAGACTCTATCTTCTCCTCTATGGTGCCTCTATTGGGGCACCTGATAAGAAGCCTGTCTGGCACTTTCCAGAA
AAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAGAGTCCGTTCTTGGAGGTCTTTCTCATACATATTTTGTTGGCAATGCTCCAATGGCTCA
TATGGTTGTACCACCTACAGAAACTGCTCAAGTTCCATCTTTGAAGCGATTCTTTTTCAAGTCTCAAGTGATTGCAACCAATAAATTCAATATTGGGAAATGTGAAGATT
TTGTATGGGTTACAAAGGATGAGTTGATGGAGTATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATGATCATCAGTTGATGCTAGTAGACTGACCACATAAGTCCCACA
TAGACCGTTTTCAATCAACAAATTGATGGTCAGTGTGTAAGTGACTTAGAGGATTGAGTTATAAAATGCTAAATTAATGGTAAGGCCGGAGGCTTTGTTTGTTGCTCTGA
TGTAAAATGGGCGAATGAGGATACCAATTTGGGATCAGCACTTTTGGCAATTTCCTCTCAGCTGTTTCTTTGATTATTAGATAGCCTGGATTAATGGTTCGATCTCCTTA
TATTGATTTCGAACAGACAAGAGTAATCTTTCGTATCGTCTTGAAATTTGTCTTGAAATTTTGAATATATCAACTTTTCATTACATTTTTTTGGTGGGACGTGGAACTTT
GAATTCTTCATTTCATTGAAAAGATTAAATTAGTATGAAAGGGTACTTATT
Protein sequenceShow/hide protein sequence
MQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVVYAFQEFKFRWQQQYRRRYPDELLDKANARGKGDYQIDYVPAPRITEADKTNDRKYAVFLHNFFRIG