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Carg07287 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07287
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box/LRR-repeat protein 17-like
Genome locationCarg_Chr17:8811788..8813806
RNA-Seq ExpressionCarg07287
SyntenyCarg07287
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575945.1 F-box/LRR-repeat protein 17, partial [Cucurbita argyrosperma subsp. sororia]4.2e-4774.47Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQ              
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                            SSDNYTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
KAG7014477.1 F-box/LRR-repeat protein 17, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-72100Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
        INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
XP_022954395.1 F-box/LRR-repeat protein 17-like [Cucurbita moschata]4.2e-4774.47Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQ              
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                            SSDNYTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
XP_022991271.1 F-box/LRR-repeat protein 17-like [Cucurbita maxima]4.7e-4673.05Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQLEDLNLNSCKNLHPERLLLQCPSL+TVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQ              
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                            SSD+YTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
XP_023548623.1 F-box/LRR-repeat protein 17-like [Cucurbita pepo subsp. pepo]4.2e-4774.47Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQ              
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                            SSDNYTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
TrEMBL top hitse value%identityAlignment
A0A0A0K8R2 F-box domain-containing protein5.8e-4265.96Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQL+DLNLNSCKNLHPERLLLQCP LR VHASDC+EL+VGAIR QL+KAAAPEENLLSCKRLADGSKRIRVPPL+NS               
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                           +SSDNYTKRR+VGSHQC IL+S
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
A0A1S3BR56 F-box/LRR-repeat protein 17 isoform X25.8e-4265.96Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQL+DLNLNSCKNLHPERLLLQCP LR VHASDC+EL+VGAIR QL+KAAAPEENLLSCKRLADGSKRIRVPPL+NS               
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                           +SSDNYTKRR+VGSHQC IL+S
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
A0A1S4DYH7 F-box/LRR-repeat protein 17 isoform X15.8e-4265.96Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQL+DLNLNSCKNLHPERLLLQCP LR VHASDC+EL+VGAIR QL+KAAAPEENLLSCKRLADGSKRIRVPPL+NS               
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                           +SSDNYTKRR+VGSHQC IL+S
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
A0A6J1GSA8 F-box/LRR-repeat protein 17-like2.1e-4774.47Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQ              
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                            SSDNYTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
A0A6J1JQA0 F-box/LRR-repeat protein 17-like2.3e-4673.05Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN
        + ALYLNCPQLEDLNLNSCKNLHPERLLLQCPSL+TVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQ              
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALN

Query:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
                            SSD+YTKRRRVGSHQCNILMS
Subjt:  INMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
SwissProt top hitse value%identityAlignment
Q8W104 F-box/LRR-repeat protein 173.9e-1951.11Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQN
        + AL+LNCP+L DLNLN C NLHPE L+LQCP L+ V+AS C+ L+ GAIR Q+ +  +  EN +  KRLAD SKRI+  P +  +  ++
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQN
Arabidopsis top hitse value%identityAlignment
AT3G54650.1 RNI-like superfamily protein2.8e-2051.11Show/hide
Query:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQN
        + AL+LNCP+L DLNLN C NLHPE L+LQCP L+ V+AS C+ L+ GAIR Q+ +  +  EN +  KRLAD SKRI+  P +  +  ++
Subjt:  MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTCTATATCTTAACTGCCCACAACTAGAGGATCTCAATCTGAACTCTTGCAAAAATTTGCATCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGAACTGT
GCACGCATCAGATTGCAAGGAGTTAGTAGTTGGAGCTATTCGAATTCAGCTTGATAAGGCTGCTGCACCTGAGGAGAACCTACTATCATGCAAGCGCTTGGCAGATGGCT
CAAAACGTATTCGAGTTCCACCTCTTATTAATTCACAGGCAAGTCAGAACTACTCGTTATATCCATATAGTGCTCTGAACATAAACATGGTTGTTAAGAACATATTGCCC
AAGAGCGAGCTTAAACTTGTGAGCTTAATGTCATCGGATAATTATACGAAACGAAGAAGGGTAGGAAGCCATCAGTGTAACATTCTTATGTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCTCTATATCTTAACTGCCCACAACTAGAGGATCTCAATCTGAACTCTTGCAAAAATTTGCATCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGAACTGT
GCACGCATCAGATTGCAAGGAGTTAGTAGTTGGAGCTATTCGAATTCAGCTTGATAAGGCTGCTGCACCTGAGGAGAACCTACTATCATGCAAGCGCTTGGCAGATGGCT
CAAAACGTATTCGAGTTCCACCTCTTATTAATTCACAGGCAAGTCAGAACTACTCGTTATATCCATATAGTGCTCTGAACATAAACATGGTTGTTAAGAACATATTGCCC
AAGAGCGAGCTTAAACTTGTGAGCTTAATGTCATCGGATAATTATACGAAACGAAGAAGGGTAGGAAGCCATCAGTGTAACATTCTTATGTCTTAAACAGTTCAGAAGTT
CATAATGTTTTTCTTCTTGGCACACTGATAGTAATTGTGCGTTGTGTATTAGAGCCAATGAAGGCAGAGTGCAGCTGCCATCCATTTGGGGTTATAGGCAGAGCACCTCG
CCAGTGTAAACATTTTTATTTGTAACACTTCCACACTTCCTAAAACTATATTTTTCAGTATGGAACTGAGTCCAGTACCCAGAGCCAAGCCATACATGGAAAGCTTATTA
GGGTTTATAAGTTCTTTTTCTTTCCCCCCAATAAAGAACGATAGTTATTTATGATTAATTATTATTTGAGCACTACTTGATTGACTCCACTTGGTTGTAAGTTCATGTTC
TGGAAGATGAGATTCGGAGTTCAGGGCAGGACTTGGAGGATTTATTATTCAAGGTCACCTACACTAGGTCGTGGTGGTGGCCCTCCAAATTCTTGGATGCTCGGTCAAAC
GGTATAAAACTATTAGCCACATTGGTTCGGTCTCAATTAAGAAGCTAGTTCCTTTGACTCGAGACAGCTCTCTTTTGCCTAAGTATTATAGGGAAAATCTCGACCTAATC
TACAAGGCTAAATAGGTACGTCAAATCTCAGCTATGTTCAATTTTATGCTTCATTAAATTTGATTCTTGATTTTTTGATATCATCGTCTTCCTTCACTTGCTATCGATTG
ATGAAGGTGGGTTTGAAGAATTTCACTTCAATCAAAACTAACGCAAAATTGAAAAATATCACACGTGGAAAGACACCCAAAAGACAGGCACACGCAATACACATTAATCG
ATCACGAACACACAGTCACAATCCACATGTGGCAGAGAGACAAAGAAACACATCAAATTAAAAGTTTGATTAACACCCAAAGTTCGAACTTTTTTCTTTCCTTTTCTTTT
TAAATACTTAAAAGCGTTTTTTTAACACAATTTTAAAGCTTAGCTAGCCATTGCATTATTAGCACAAAAAAAGACATTTTCAATAAATAACATAAACAGCAAACCCAAAA
CATGAATGGGTCATCCACATAAATGCCTTCTTCAACCATCCACATGACCTTGTTCCCTATGCTCAACCATCCATATGGAACATTTCCATTTAATTATTGGCCCTCTCCTC
TATATA
Protein sequenceShow/hide protein sequence
MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALNINMVVKNILP
KSELKLVSLMSSDNYTKRRRVGSHQCNILMS