; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg07343 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07343
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L44
Genome locationCarg_Chr01:1221070..1223049
RNA-Seq ExpressionCarg07343
SyntenyCarg07343
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006457 - protein folding (biological process)
GO:0009408 - response to heat (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0031072 - heat shock protein binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051082 - unfolded protein binding (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4385822.1 hypothetical protein F8388_010378 [Cannabis sativa]1.2e-5298.13Show/hide
Query:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A++VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

KAF4397433.1 hypothetical protein G4B88_027173 [Cannabis sativa]1.2e-5298.13Show/hide
Query:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A++VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

KAG6606901.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]9.3e-5398.15Show/hide
Query:  SANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
        SA +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
Subjt:  SANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

KAG7014271.1 60S ribosomal protein L44 [Cucurbita argyrosperma subsp. argyrosperma]1.2e-5298.15Show/hide
Query:  SANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
        SA  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK
Subjt:  SANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDK

Query:  KGKGTSLF
        KGKGTSLF
Subjt:  KGKGTSLF

KAG7036604.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-57100Show/hide
Query:  MDTGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHF
        MDTGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHF
Subjt:  MDTGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHF

Query:  EIGGDKKGKGTSLF
        EIGGDKKGKGTSLF
Subjt:  EIGGDKKGKGTSLF

TrEMBL top hitse value%identityAlignment
A0A445KMW5 60S ribosomal protein L44 isoform A (Fragment)7.7e-5395.41Show/hide
Query:  VSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGD
        +SA +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGD
Subjt:  VSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGD

Query:  KKGKGTSLF
        KKGKGTSLF
Subjt:  KKGKGTSLF

A0A6J1KSV1 60S ribosomal protein L441.7e-5299.05Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A7J6GSC6 Uncharacterized protein5.9e-5398.13Show/hide
Query:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A++VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

A0A7J6HQ78 Uncharacterized protein5.9e-5398.13Show/hide
Query:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A++VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

A0A803QLA4 Uncharacterized protein5.9e-5398.13Show/hide
Query:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
        A++VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK
Subjt:  ANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKK

Query:  GKGTSLF
        GKGTSLF
Subjt:  GKGTSLF

SwissProt top hitse value%identityAlignment
A8PCG3 60S ribosomal protein L445.9e-4276.92Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

O23290 60S ribosomal protein L36a3.1e-5192.38Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

O59870 60S ribosomal protein L442.0e-4277.88Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK K
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

Q96499 60S ribosomal protein L443.9e-5497.14Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGK
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

Q9UWE4 60S ribosomal protein L445.9e-4276.92Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein2.2e-5292.38Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein2.2e-5292.38Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK
        +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEIGGDKKGK
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein5.8e-4591.4Show/hide
Query:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI
        +VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IKRCKHFEI
Subjt:  VVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTGGATCAGTGAGTGCAAACGTGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATA
TAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGCTAAAACTA
CCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGA
ACATCTCTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATACTGGATCAGTGAGTGCAAACGTGGTGAACGTTCCCAAGACAAAGAAAACTTATTGCAAAAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTTACACAATA
TAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCCGTGTTCCACAAGAAGGCTAAAACTA
CCAAGAAGATTGTATTGAGGCTGCAATGTCAGGGTTGCAAACACGTATCCCAGCACGCTATCAAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGA
ACATCTCTTTTCTAGATCCGTTGTCTGCTCTTAGCTTTTGTGATTTCTTTTTGACAAAATCAATTGTTATCGGAGATGTTACAGCATTACTCTGTTTGGTTCTCCAATTA
GTTCTAAATGTCGTAACAATACTATTTAGCTTAAGCCATCTCATCTCAATTATCAAATTTCCAAATTTTTTTTTGCTTTTCGTTTAGTTGTTTCTCAAAGAAACTTGTGT
TTGAAGTGCTTTCATAGCTTAACCATTTGATTTTTGAGAATAATTATTGTTAGCTTACATTTAGTTCAGGCAATGATATTCATCCATTGACTTGACAGTGCTTGAATCTC
ACATAAGAGCCAATGTAGCCAATTGTAATTTTGAACTCACATCTTAACACCTATCCTAAAAGGCTCTACCAATCTCTTTGAACAACAAACACAACGAAAAACTTGAAGAA
AAGAAAAGCCACCCTGTATCTATAACATATTTGGGTCCACTGATATCCAAATCATGTATATATGAAGCAAAAGCCAATTACCACAGTAACGCTAAACCATTGGACAACAG
CATTAAAGAGTGAAACCAGCTGCAAATGATTAACACTGCTGAAGAACAACACACAAAATTAACTCCGATTGTCAAAAAATAATGTTACATTTGAAAGGAAGAACAGAACA
ATCCAGTTCAAAATCCAAAATATCCATGTTTTGCACTATAAATGTGTTTTCTCAGTAGTATTTGCAATATACACATAAAAGACCATATCGATACCAAAGGGACGAGTCTA
CTATACAAAATTGTGCCACAATGGTGTAAGAATCTTATCAAAGCCCTCCAGTGTCCCCTACACTATGCAGCACATGACACAATGAACAAAGTTAATGGAGTTCCAATTTC
CCGCATCATATAATGTATGCTATTCATGTAACTACGAAAAGTTGGAACTGTGATACACCTGAAGCATGATATTGTGTAGAATTGAACTAGAAGAAGCAAACATAATATGG
ATAAAGTAAAGACATTTGTTGTCATACGAGCAAAATTT
Protein sequenceShow/hide protein sequence
MDTGSVSANVVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKG
TSLF