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Carg07444 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07444
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCarg_Chr01:1845515..1845913
RNA-Seq ExpressionCarg07444
SyntenyCarg07444
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607005.1 hypothetical protein SDJN03_00347, partial [Cucurbita argyrosperma subsp. sororia]5.2e-3975Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
        MAPSAAIFLSLLLS        S  PL                 +  QLQPSP LPPPPFPP RFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY

Query:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        FSGAVGKPPAMAALVVVGLA GALDLMVFGKW
Subjt:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW

KAG7036704.1 hypothetical protein SDJN02_00324, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-67100Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
        MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY

Query:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
Subjt:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW

XP_022949046.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]3.3e-6295.45Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
        MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTT CSNP VQQLQPSPPLPPPP PPPRFTY+TLSSPPPP RFIYTTGVPSDLYQNDEKNRWYY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY

Query:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        FSGAVGKPPAMAALVVVGLACGALDL+VFGKW
Subjt:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW

XP_022998633.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.9e-4190.91Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWY
        MAPSAAIFLSLLLSFIQ SPPI ASPLDP  EINC STTPCSNP VQQLQPSPPLPPPP PPPRFTY+TLSSPPPPP+FIYTTGVPSDLYQNDEKNRWY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWY

XP_023525793.1 uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]9.1e-5284.09Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
        MAPSAAIFLSLLLSFIQTSPPISASPLDPD EINC STTPCSNP V+QLQPSPPLPPPP               PPPRF+YT GVPSDLYQNDEKNRWYY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY

Query:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
Subjt:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein1.7e-2754.61Show/hide
Query:  MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPP-------------FPPPRFTYSTLSSPPPPPRFI
        MAP AAI LS       LLL+  QTS PI   P +PD EI C S  PCSNP +QQL P PP PPPP              PPPRF Y+T S  PPPPRF 
Subjt:  MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPP-------------FPPPRFTYSTLSSPPPPPRFI

Query:  YTTGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        YTTGVP +LY+ D  N WYYFSG     P MAA V V + CGAL LM F KW
Subjt:  YTTGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW

A0A5A7V4T2 Formin-like protein 32.4e-2957.05Show/hide
Query:  MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPF----------PPPRFTYSTLSSPPPPPRFIYTT
        M  SAAI LS       LLL+  QTS PIS  P +PD EI C S  PCSNP +QQL P PP PPPP           PPPRF Y+  S  PPPPRF YTT
Subjt:  MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPF----------PPPRFTYSTLSSPPPPPRFIYTT

Query:  GVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        GVP +LY+ D  N WYYFSG  G  P MAA VVV L CGAL LM F KW
Subjt:  GVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW

A0A6J1GAW3 leucine-rich repeat extensin-like protein 21.6e-6295.45Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY
        MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTT CSNP VQQLQPSPPLPPPP PPPRFTY+TLSSPPPP RFIYTTGVPSDLYQNDEKNRWYY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYY

Query:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        FSGAVGKPPAMAALVVVGLACGALDL+VFGKW
Subjt:  FSGAVGKPPAMAALVVVGLACGALDLMVFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028612.6e-2857.93Show/hide
Query:  MAPSAAI-----FLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLP--------PPPFPPPRFTYSTLSSPPPPPRFIYTTGVPS
        MAPSAAI     FL L L    + P     P DP++EI C S  PCSNP V+Q  P PP P        PPP PPPRF Y++L SPPPPPRFIYTTGVP 
Subjt:  MAPSAAI-----FLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLP--------PPPFPPPRFTYSTLSSPPPPPRFIYTTGVPS

Query:  DLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW
        +LYQ D  NRWYYFSG      A AAL VV L CGAL+LM FGKW
Subjt:  DLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW

A0A6J1KHA8 leucine-rich repeat extensin-like protein 39.2e-4290.91Show/hide
Query:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWY
        MAPSAAIFLSLLLSFIQ SPPI ASPLDP  EINC STTPCSNP VQQLQPSPPLPPPP PPPRFTY+TLSSPPPPP+FIYTTGVPSDLYQNDEKNRWY
Subjt:  MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G23040.1 hydroxyproline-rich glycoprotein family protein9.9e-0438.46Show/hide
Query:  ISASPLDPDTEINCDSTTPCSNPFVQQLQPSPP---LPPPPF--PPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFSGAVGK
        + A  LD    I C  +   + P      PSPP    PPPP   PPP    S+   PPPP  F+Y TG P +LY  DE+     F  A GK
Subjt:  ISASPLDPDTEINCDSTTPCSNPFVQQLQPSPP---LPPPPF--PPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFSGAVGK

AT3G03350.1 NAD(P)-binding Rossmann-fold superfamily protein3.1e-0552Show/hide
Query:  PLPPPPFPPPRFTY-STLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFS
        PL P   PPPR TY S  SS PPPP+++Y TGVP +LY+ +  ++W Y S
Subjt:  PLPPPPFPPPRFTY-STLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFS

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein8.1e-0641.1Show/hide
Query:  PLPPPPFPPPRFTY-STLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALD
        PL P   PPPR TY S  SS PPPP+++Y TGVP +LY+ +  ++W Y + +V +      LV+V +  G ++
Subjt:  PLPPPPFPPPRFTY-STLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTCCGCCGCCATTTTTCTCTCTCTTCTCCTTTCCTTCATACAAACCTCTCCGCCGATATCGGCCAGTCCGCTCGATCCCGACACGGAGATAAATTGTGACTC
AACAACCCCCTGTTCCAACCCATTTGTTCAGCAATTGCAGCCATCGCCACCGCTACCACCACCACCGTTTCCACCTCCGAGGTTTACTTATTCGACTTTGTCGTCTCCAC
CACCGCCTCCGAGGTTTATTTACACAACGGGCGTTCCCAGTGACCTATACCAGAATGATGAAAAGAACCGTTGGTATTACTTCTCCGGCGCGGTCGGGAAGCCGCCAGCC
ATGGCGGCGCTGGTGGTGGTGGGCCTTGCCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTTCCGCCGCCATTTTTCTCTCTCTTCTCCTTTCCTTCATACAAACCTCTCCGCCGATATCGGCCAGTCCGCTCGATCCCGACACGGAGATAAATTGTGACTC
AACAACCCCCTGTTCCAACCCATTTGTTCAGCAATTGCAGCCATCGCCACCGCTACCACCACCACCGTTTCCACCTCCGAGGTTTACTTATTCGACTTTGTCGTCTCCAC
CACCGCCTCCGAGGTTTATTTACACAACGGGCGTTCCCAGTGACCTATACCAGAATGATGAAAAGAACCGTTGGTATTACTTCTCCGGCGCGGTCGGGAAGCCGCCAGCC
ATGGCGGCGCTGGTGGTGGTGGGCCTTGCCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAATGGTAA
Protein sequenceShow/hide protein sequence
MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFSGAVGKPPA
MAALVVVGLACGALDLMVFGKW