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Carg07447 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07447
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr01:1863792..1864043
RNA-Seq ExpressionCarg07447
SyntenyCarg07447
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149790.1 probable calcium-binding protein CML28 [Cucumis sativus]2.3e-3289.16Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+ISFQEFF+FAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

XP_016902062.1 PREDICTED: polcalcin Bra n 2-like [Cucumis melo]1.6e-3390.36Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD+GV+SA+CERIFKRFDANGDG+ISATELGDALNG GVSSEDAKRMMDAIDKDGDG+ISFQEF +FAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

XP_022948513.1 probable calcium-binding protein CML28 [Cucurbita moschata]1.4e-37100Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

XP_022982739.1 polcalcin Syr v 3-like [Cucurbita maxima]6.8e-2978.31Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MA++ + +AECERIFKRFDANGDG ISA ELGDALNG+GV++E+AKRMMDAIDKDGDGFIS++EF +F K+NRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

XP_038874793.1 probable calcium-binding protein CML28 [Benincasa hispida]1.1e-3186.75Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MA++GV +A+CERIFKRFDANGDG+ISATELGDALNG GVS+EDAKRMMDAIDKDGDG ISF+EF EFAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

TrEMBL top hitse value%identityAlignment
A0A0A0L775 Putative calcium-binding protein CML281.1e-3289.16Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+ISFQEFF+FAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

A0A1S4E1G1 polcalcin Bra n 2-like7.6e-3490.36Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD+GV+SA+CERIFKRFDANGDG+ISATELGDALNG GVSSEDAKRMMDAIDKDGDG+ISFQEF +FAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

A0A6J1G9I0 probable calcium-binding protein CML286.6e-38100Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

A0A6J1J5E7 polcalcin Syr v 3-like3.3e-2978.31Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MA++ + +AECERIFKRFDANGDG ISA ELGDALNG+GV++E+AKRMMDAIDKDGDGFIS++EF +F K+NRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

A0A6J1KB11 probable calcium-binding protein CML286.6e-38100Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

SwissProt top hitse value%identityAlignment
P69198 Polcalcin Bra n 27.1e-2164.29Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD   + AE +RIFK+FDANGDG+ISA+ELGDAL  +G V+ +D KRMM  ID DGDG+IS+QEF +FA  NR LMKD AK F
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

P69199 Polcalcin Bra r 27.1e-2164.29Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD   + AE +RIFK+FDANGDG+ISA+ELGDAL  +G V+ +D KRMM  ID DGDG+IS+QEF +FA  NR LMKD AK F
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

Q39419 Polcalcin Bet v 43.5e-2062.2Show/hide
Query:  DNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        D+  D AE ERIFKRFDANGDG+ISA ELG+AL  +G ++ ++ K MM  ID DGDGFISFQEF +F + NR L+KD AK F
Subjt:  DNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

Q8VWY7 Polcalcin Nic t 27.1e-2165.06Show/hide
Query:  ADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        AD+  D A+ ERIFKRFDANGDGQISATELG+ L  +G V+ E+ K MMD ID + DGFISFQEF EFA+ NR L++D AK F
Subjt:  ADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

Q9SRP7 Probable calcium-binding protein CML282.4e-2165.48Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD   + AE +RIFK+FDANGDG+ISA ELGDAL  +G V+ ED KRMM  ID DGDG+IS+QEF +FA  NR LMKD AK F
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family9.9e-1039.24Show/hide
Query:  ECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQEFFEF---AKDNRALMKDFAKAF
        E E +FK+FD NGDG+IS+ ELG  +  +G  V  E+ ++ +  ID+ GDG+I+F+EF E      D   ++++   AF
Subjt:  ECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQEFFEF---AKDNRALMKDFAKAF

AT1G73630.1 EF hand calcium-binding protein family2.9e-0940Show/hide
Query:  ECERIFKRFDANGDGQISATELGDALNGIGVS--SEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMK
        E +++F +FDANGDG+IS +ELG+    +G S   E+  R++D ID D DGFI+ +EF    + + + ++
Subjt:  ECERIFKRFDANGDGQISATELGDALNGIGVS--SEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMK

AT3G03430.1 Calcium-binding EF-hand family protein1.7e-2265.48Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD   + AE +RIFK+FDANGDG+ISA ELGDAL  +G V+ ED KRMM  ID DGDG+IS+QEF +FA  NR LMKD AK F
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

AT3G07490.1 ARF-GAP domain 112.2e-0937.35Show/hide
Query:  VDSAECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQEF---FEFAKDNRALMKDFAKAF
        +D AE  RIF+ FD NGDG+I+  EL D+L  +G  +  +D  +M++ ID +GDG++  +EF   ++   + R   +D  +AF
Subjt:  VDSAECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQEF---FEFAKDNRALMKDFAKAF

AT5G17480.1 pollen calcium-binding protein 11.1e-1961.9Show/hide
Query:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF
        MAD   + AE +RIFK+FDANGDG+ISA EL +AL  +G V+++D KRMM  ID DGDG IS+QEF +FA  NR LMKD AK F
Subjt:  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCATTGAACGG
AATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCGTTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCG
CTTTGATGAAGGATTTTGCCAAAGCCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCATTGAACGG
AATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCGTTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCG
CTTTGATGAAGGATTTTGCCAAAGCCTTTTAG
Protein sequenceShow/hide protein sequence
MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF