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Carg07476 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07476
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein 3, chloroplastic-like
Genome locationCarg_Chr01:2011392..2014135
RNA-Seq ExpressionCarg07476
SyntenyCarg07476
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups (molecular function)
InterPro domainsIPR006924 - Ribosomal protein PSRP-3/Ycf65
IPR038447 - PSRP-3/Ycf65 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607038.1 30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4491.92Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

KAG7036736.1 30S ribosomal protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-74100Show/hide
Query:  MEEDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ
        MEEDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ
Subjt:  MEEDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ

Query:  QDRKEAELIEIEKQITLAERVVGKQGSRAEERQAGQESSELGADS
        QDRKEAELIEIEKQITLAERVVGKQGSRAEERQAGQESSELGADS
Subjt:  QDRKEAELIEIEKQITLAERVVGKQGSRAEERQAGQESSELGADS

XP_022948960.1 30S ribosomal protein 3, chloroplastic-like [Cucurbita moschata]2.0e-4491.92Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

XP_022997676.1 30S ribosomal protein 3, chloroplastic-like [Cucurbita maxima]2.0e-4491.92Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

XP_023522262.1 30S ribosomal protein 3, chloroplastic-like [Cucurbita pepo subsp. pepo]2.0e-4491.92Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L9T8 Uncharacterized protein1.3e-4490.91Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S+ S + EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

A0A1S3CF24 30S ribosomal protein 3, chloroplastic-like1.3e-4490.91Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S+ S + EKLGVVVKPMEKPRLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

A0A6J1D356 30S ribosomal protein 3, chloroplastic-like1.1e-4389.9Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S+ S + EKLGVVVKPMEK RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

A0A6J1GBD3 30S ribosomal protein 3, chloroplastic-like9.8e-4591.92Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

A0A6J1K853 30S ribosomal protein 3, chloroplastic-like9.8e-4591.92Show/hide
Query:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +D  S  S   EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
Subjt:  EDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

SwissProt top hitse value%identityAlignment
O48609 30S ribosomal protein 3, chloroplastic1.5e-3478.41Show/hide
Query:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        E+  V V   + P LVLKFIWMEKNIGI LDQM+PG G+IPLSPYYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQ
Subjt:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

P82412 30S ribosomal protein 3, chloroplastic5.2e-4390.91Show/hide
Query:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        EKL V+VKPM+KPRLVLKFIWMEKNIG+ LDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDIINLWQQ
Subjt:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

Q9LFV0 30S ribosomal protein 3-2, chloroplastic2.8e-3675.86Show/hide
Query:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ
        +K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINLWQ
Subjt:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ

Q9MUN2 Probable 30S ribosomal protein 3, chloroplastic1.3e-2252.75Show/hide
Query:  PMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQDRKEAELIEIE
        P++K   VLKF+W+EKN+ + +DQ +   G  P++ Y+FWPRKDAWEELK  L +KPWIS  + I LLNQ TD+IN WQ+D K+  L E +
Subjt:  PMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQDRKEAELIEIE

Q9SX22 30S ribosomal protein 3-1, chloroplastic6.6e-3885.54Show/hide
Query:  VVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        VVKP EK R+VLKF+WMEKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ
Subjt:  VVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

Arabidopsis top hitse value%identityAlignment
AT1G68590.1 Ribosomal protein PSRP-3/Ycf654.7e-3985.54Show/hide
Query:  VVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        VVKP EK R+VLKF+WMEKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ
Subjt:  VVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

AT1G68590.2 Ribosomal protein PSRP-3/Ycf651.8e-3884.15Show/hide
Query:  VKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ
        +KP EK R+VLKF+WMEKNIG+GLDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ
Subjt:  VKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQ

AT5G15760.1 Ribosomal protein PSRP-3/Ycf652.0e-3775.86Show/hide
Query:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ
        +K+ V+VKP+EKP++VLKF+WM+K+IG+ LD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINLWQ
Subjt:  EKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAA
GAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTAC
TTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGACAGAAAAGAAGCTGAACTGATAGAG
ATAGAGAAACAAATTACTCTAGCTGAGCGCGTGGTTGGAAAGCAAGGTTCAAGAGCTGAAGAACGTCAGGCTGGGCAAGAGAGCAGCGAGCTTGGTGCTGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGACCAGTTCTCACTCTATAGTACGATGTTTGAGAAACTTGGAGTGGTTGTGAAACCGATGGAAAAGCCACGGCTTGTTCTGAAGTTCATATGGATGGAGAA
GAACATTGGCATTGGACTTGATCAGATGATTCCTGGTCATGGAACTATTCCTCTTAGTCCATACTACTTCTGGCCTAGGAAAGATGCATGGGAAGAGCTCAAAGTTTTAC
TTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATCCTTCTAAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGACAGAAAAGAAGCTGAACTGATAGAG
ATAGAGAAACAAATTACTCTAGCTGAGCGCGTGGTTGGAAAGCAAGGTTCAAGAGCTGAAGAACGTCAGGCTGGGCAAGAGAGCAGCGAGCTTGGTGCTGATTCTTGA
Protein sequenceShow/hide protein sequence
MEEDQFSLYSTMFEKLGVVVKPMEKPRLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQDRKEAELIE
IEKQITLAERVVGKQGSRAEERQAGQESSELGADS