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Carg07501 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07501
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription elongation factor SPT4 homolog
Genome locationCarg_Chr01:2126779..2130306
RNA-Seq ExpressionCarg07501
SyntenyCarg07501
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process)
GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process)
GO:0032044 - DSIF complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR009287 - Transcription initiation Spt4
IPR022800 - Spt4/RpoE2 zinc finger
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR038510 - Spt4 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]1.3e-6298.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

XP_012065876.1 transcription elongation factor SPT4 homolog 2 [Jatropha curcas]1.6e-6093.97Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFNGIISVMDP+RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CE+ERVQY PPKRV
Subjt:  NICEEERVQYAPPKRV

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]3.8e-6297.41Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]2.7e-63100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        NICEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]3.8e-6297.41Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

TrEMBL top hitse value%identityAlignment
A0A0A0L9Q3 Transcription elongation factor SPT4 homolog6.4e-6398.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

A0A1S3CFH1 Transcription elongation factor SPT4 homolog6.4e-6398.28Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

A0A6J1CNB4 Transcription elongation factor SPT4 homolog1.9e-6297.41Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        N+CEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

A0A6J1G8V8 Transcription elongation factor SPT4 homolog1.3e-63100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        NICEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

A0A6J1K6X8 Transcription elongation factor SPT4 homolog1.3e-63100Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        NICEEERVQYAPPKRV
Subjt:  NICEEERVQYAPPKRV

SwissProt top hitse value%identityAlignment
P63271 Transcription elongation factor SPT4-A2.4e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q5RFH5 Transcription elongation factor SPT41.9e-1941.35Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEE
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +  
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEE

Query:  RVQY
         V Y
Subjt:  RVQY

Q6DGQ0 Transcription elongation factor SPT48.4e-2048.89Show/hide
Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 15.0e-5782.76Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+FAPGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
         IC++ RVQY PPKR+
Subjt:  NICEEERVQYAPPKRV

Q94C60 Transcription elongation factor SPT4 homolog 23.5e-5885.34Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+FAPGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        ++C+EERVQY  PKR+
Subjt:  NICEEERVQYAPPKRV

Arabidopsis top hitse value%identityAlignment
AT5G08565.1 Transcription initiation Spt4-like protein3.6e-5882.76Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+FAPGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
         IC++ RVQY PPKR+
Subjt:  NICEEERVQYAPPKRV

AT5G08565.2 Transcription initiation Spt4-like protein1.1e-4670.69Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+FAPGCYTLAVSEALPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
         IC++ RVQY PPKR+
Subjt:  NICEEERVQYAPPKRV

AT5G63670.1 SPT4 homolog 22.5e-5985.34Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+FAPGCYTLAVSE LPE++Q
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQ

Query:  NICEEERVQYAPPKRV
        ++C+EERVQY  PKR+
Subjt:  NICEEERVQYAPPKRV

AT5G63670.2 SPT4 homolog 26.8e-4191.14Show/hide
Query:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCTCCTGCTCAAATTCCTACCAGTTTCGGGCACGAGCTCCGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGTGAATCGGGCTGTGA
GAATTGTCCCTTCTTCAAGATGGACGAAGACCACGAGCGTGTTGTAGAGTGCACTACTCCTAATTTTAATGGGATAATTTCTGTCATGGATCCTGCCAGAAGTTGGGCTG
CTAGATGGCTGCGAATTGGAAGATTTGCCCCTGGTTGTTATACTCTAGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATATATGTGAAGAGGAGCGCGTGCAATAT
GCACCACCAAAACGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATTTCTCCCCAATTTTATTTTGAACCCGGAATTTCTATTTCTTCTTCTTCCTCCTCAATCGGTACTCTTTCTTCCCAAAATTTCTTTTGCTGCCTAGTTTTTGCACCAAA
TCTCATTGACGCCGGCCACCGGCGGTACAGTCTCCCCCGACCATATATCTTTAGTAATCGGCAGAAGGATCCAGTGAGTCATAGAAAACTAGACGCGAGGGATCGGAAGT
AATGGCAAGCGCTCCTGCTCAAATTCCTACCAGTTTCGGGCACGAGCTCCGAGCTTGTCTTCGTTGTCGTCTCGTCAAAACTTACGATCAGTTTCGTGAATCGGGCTGTG
AGAATTGTCCCTTCTTCAAGATGGACGAAGACCACGAGCGTGTTGTAGAGTGCACTACTCCTAATTTTAATGGGATAATTTCTGTCATGGATCCTGCCAGAAGTTGGGCT
GCTAGATGGCTGCGAATTGGAAGATTTGCCCCTGGTTGTTATACTCTAGCAGTCTCAGAGGCCCTCCCTGAGGATTTGCAGAATATATGTGAAGAGGAGCGCGTGCAATA
TGCACCACCAAAACGTGTTTGACCCTATGTTATCTCTCGCTCATCCGAGTTCCACCTTGTTCGTGCAGTAGTATTTTAAGTTGAACTAGCATTTCGCATTCGCTGTCTTT
TGGTCGAAATGAACAGAAGTATAGTTGCTAACACCTTGCATTGTATATCTTAATCTACTTCCCCTTGTGCTTCCTTATTGCCTATTACTCACGTGTGGAAGAAGTTGAAT
TTGAGTTGCCTAGAACAATACCGGTTTAGCCAAACACTGCTAGGTTATTGCTGTTGGTTGTTGAAGGAGAAAACATTTTAGCCCCCACCTCGAGTTCACATGCTCCGGTA
GGACGATTTTGATAATCACTTTTATGGTTCCCAATCGGGATGGACGATAAAGTGATGGAATACATATGCTCACTTCTTAGTACCCCTAATACATATACTATGCAATGCTT
CTTCAAGCGGATGTTAGGCTGATGATAAAAAGAAAAAAAATTAATAAACAAAAATAGTGATGAAAATAGAGTTCTTAGGACTACAAACATTTGTTGAACCTGGAAAATAA
AGGAAAAATATCCTTTTTTGCTCTTCAATATATGCTTTTTA
Protein sequenceShow/hide protein sequence
MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQY
APPKRV