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Carg07506 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07506
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationCarg_Chr20:7653226..7653603
RNA-Seq ExpressionCarg07506
SyntenyCarg07506
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042447.1 hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa]1.6e-3466.39Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQ
        MA T   P+M I+ +ILL N  TI  +  +N+TA EWC G  ENCLIGD +SDSEFLMET+TSRMLLDF + QTP+TNNP++QS PEC RPPRYDSC+G+
Subjt:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQ

Query:  KTSIPNPENCDTRNRVNPC
        K SI NPENCD RNR NPC
Subjt:  KTSIPNPENCDTRNRVNPC

KAE8649335.1 hypothetical protein Csa_014907 [Cucumis sativus]4.9e-3161.54Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQK
        MA T   P+M IL + LL N PT  +  +N+T +EWC G  ENCL+GD + DSEFLMETETSRMLLDF + QTP T +P++QS  EC RPPRYDSC G++
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQK

Query:  TSIPNPENCDTRNRVNP
          IPNPENCD RNR NP
Subjt:  TSIPNPENCDTRNRVNP

KAG6607065.1 hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia]8.3e-6397.6Show/hide
Query:  MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRY
        MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRY
Subjt:  MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRY

Query:  DSCLGQKTSIPNPENCDTRNRVNPC
        D CLGQK  IPNPENCDTRNRVNPC
Subjt:  DSCLGQKTSIPNPENCDTRNRVNPC

KAG7011063.1 hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-64100Show/hide
Query:  MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRY
        MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRY
Subjt:  MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRY

Query:  DSCLGQKTSIPNPENCDTRNRVNPC
        DSCLGQKTSIPNPENCDTRNRVNPC
Subjt:  DSCLGQKTSIPNPENCDTRNRVNPC

KGN53798.1 hypothetical protein Csa_014747 [Cucumis sativus]1.1e-3364.8Show/hide
Query:  ITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLD-FNSFQTPNTNNPDKQSAPECNRPPRY
        + SN+MAATL  PSM  L  ILLLN P IS+A +N T ++WCD   LENCL+GDLNS SEFLM TE+S ML+D F +FQTP  N+ +K+S P+C+RPPRY
Subjt:  ITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLD-FNSFQTPNTNNPDKQSAPECNRPPRY

Query:  DSCLGQKTSIPNPENCDTRNRVNPC
        DSCLG K SIPNPE C T NRVNPC
Subjt:  DSCLGQKTSIPNPENCDTRNRVNPC

TrEMBL top hitse value%identityAlignment
A0A0A0KVZ2 Uncharacterized protein1.7e-3261.86Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQK
        MA T   P+M IL + LL N PT  +  +N+T +EWC G  ENCL+GD + DSEFLMETETSRMLLDF + QTP T +P++QS  EC RPPRYDSC G++
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQK

Query:  TSIPNPENCDTRNRVNPC
          IPNPENCD RNR NPC
Subjt:  TSIPNPENCDTRNRVNPC

A0A0A0KW62 Uncharacterized protein5.1e-3464.8Show/hide
Query:  ITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLD-FNSFQTPNTNNPDKQSAPECNRPPRY
        + SN+MAATL  PSM  L  ILLLN P IS+A +N T ++WCD   LENCL+GDLNS SEFLM TE+S ML+D F +FQTP  N+ +K+S P+C+RPPRY
Subjt:  ITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLD-FNSFQTPNTNNPDKQSAPECNRPPRY

Query:  DSCLGQKTSIPNPENCDTRNRVNPC
        DSCLG K SIPNPE C T NRVNPC
Subjt:  DSCLGQKTSIPNPENCDTRNRVNPC

A0A5D3BZL1 Uncharacterized protein7.9e-3566.39Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQ
        MA T   P+M I+ +ILL N  TI  +  +N+TA EWC G  ENCLIGD +SDSEFLMET+TSRMLLDF + QTP+TNNP++QS PEC RPPRYDSC+G+
Subjt:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQ

Query:  KTSIPNPENCDTRNRVNPC
        K SI NPENCD RNR NPC
Subjt:  KTSIPNPENCDTRNRVNPC

A0A6J1G927 uncharacterized protein LOC1114520442.2e-1649.57Show/hide
Query:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKT
        AA ++  +M I+  ILLLN PT S A  +              LIGD + DSEFLME+  SR+L    +FQT  TN+ +K S   C RPPRYDSCLGQK+
Subjt:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKT

Query:  SIPNPENCDTRNRVNPC
        + P PENC T NR NPC
Subjt:  SIPNPENCDTRNRVNPC

A0A6J1KBP5 uncharacterized protein LOC1114928544.8e-1649.57Show/hide
Query:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKT
        AA ++  +M I+  ILLLN PT S A                 LIGD + DSEFLME+  SR+L     FQT  TN+ +K S   C RPPRYDSCLGQK+
Subjt:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKT

Query:  SIPNPENCDTRNRVNPC
        + P PENC T NR NPC
Subjt:  SIPNPENCDTRNRVNPC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTACTTCAAACACCATGGCTGCAACTCTACTGACACCATCAATGACGATTCTGTTCATAATTCTGCTGCTGAACCCCCCAACCATCTCCCATGCGGCCATCAA
CAAGACCGCCGCCGAGTGGTGCGACGGCCGCCTGGAGAACTGCCTCATCGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGAAACCGAGACCAGCCGGATGCTGCTGG
ACTTCAATTCTTTCCAAACTCCCAACACCAACAACCCTGACAAACAATCGGCTCCGGAGTGTAATCGGCCGCCGCGGTACGACAGCTGCCTCGGCCAGAAAACCAGTATT
CCAAACCCGGAAAATTGCGACACCAGGAATCGCGTCAATCCCTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTACTTCAAACACCATGGCTGCAACTCTACTGACACCATCAATGACGATTCTGTTCATAATTCTGCTGCTGAACCCCCCAACCATCTCCCATGCGGCCATCAA
CAAGACCGCCGCCGAGTGGTGCGACGGCCGCCTGGAGAACTGCCTCATCGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGAAACCGAGACCAGCCGGATGCTGCTGG
ACTTCAATTCTTTCCAAACTCCCAACACCAACAACCCTGACAAACAATCGGCTCCGGAGTGTAATCGGCCGCCGCGGTACGACAGCTGCCTCGGCCAGAAAACCAGTATT
CCAAACCCGGAAAATTGCGACACCAGGAATCGCGTCAATCCCTGTTAG
Protein sequenceShow/hide protein sequence
MGITSNTMAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDFNSFQTPNTNNPDKQSAPECNRPPRYDSCLGQKTSI
PNPENCDTRNRVNPC