; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg07530 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07530
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear transport factor 2
Genome locationCarg_Chr13:7655119..7656038
RNA-Seq ExpressionCarg07530
SyntenyCarg07530
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584071.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]1.2e-64100Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNY
        QMFHLVPTAQGNLCVQNDIFRLNY
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNY

XP_004153658.1 nuclear transport factor 2B [Cucumis sativus]5.8e-5686.4Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFERCRHVVST+DTQPS+V GSILIFVSGS+E+P+EEH LRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVP+ +GNL VQNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

XP_022933198.1 nuclear transport factor 2B [Cucurbita moschata]2.3e-65100Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVPTAQGNLCVQNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

XP_023001318.1 nuclear transport factor 2B [Cucurbita maxima]5.8e-6497.6Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGV DISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELP+EEHHLRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVPTAQGNLC+QNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]2.0e-6498.4Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEE DIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELP+EEHHLRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVPTAQGNLCVQNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein2.8e-5686.4Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFERCRHVVST+DTQPS+V GSILIFVSGS+E+P+EEH LRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVP+ +GNL VQNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

A0A1S3B3B7 nuclear transport factor 21.1e-5584.68Show/hide
Query:  EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQ
        EE+ DI+GKAFVEHYY LFDNER SLS+LYQPDSMLTFEGQQILGV+DIS++LQQLPFERCRHVVST+DTQPS+VPGSILIFVSGS+E+P+EEH LR+SQ
Subjt:  EEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQ

Query:  MFHLVPTAQGNLCVQNDIFRLNYG
        MFHLVP+ QGNL VQNDIFRLNYG
Subjt:  MFHLVPTAQGNLCVQNDIFRLNYG

A0A6J1CEC9 nuclear transport factor 21.4e-5585.6Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEE+++VG+AFVEHYYQLFDNER S+S+LYQP+SMLTFEGQ+ILGVDDISSRLQQLPFERCRHVVST+DTQPSA  GS+LIFVSGSLELP EEH LRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVPT+QG+L VQNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

A0A6J1F427 nuclear transport factor 2B1.1e-65100Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVPTAQGNLCVQNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

A0A6J1KQ62 nuclear transport factor 2B2.8e-6497.6Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGV DISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELP+EEHHLRFS
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNYG
        QMFHLVPTAQGNLC+QNDIFRLNYG
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNYG

SwissProt top hitse value%identityAlignment
Q10100 Nuclear transport factor 22.9e-2649.12Show/hide
Query:  FVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQG
        F + YYQ FD++R  LS+LY+ +SML+FEG Q+ G   I  +L  LPF+R +H +ST+D QP+   GS+++ V+G L L +E+   R+SQ+FHLV    G
Subjt:  FVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQG

Query:  NLCVQNDIFRLNYG
        N  V ND+FRLNYG
Subjt:  NLCVQNDIFRLNYG

Q6BWC0 Nuclear transport factor 27.2e-2545.16Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS
        M  + + V   F   YYQ FD++R  L  LY+  SMLTFE  Q+ G  DI  +L  LPF++  H +ST+D QP +  G IL+ V+G L + DE++  R+S
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFS

Query:  QMFHLVPTAQGNLCVQNDIFRLNY
        Q+FHL+P    +  V NDIFRLNY
Subjt:  QMFHLVPTAQGNLCVQNDIFRLNY

Q9C7F5 Nuclear transport factor 2B6.3e-3760.33Show/hide
Query:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF
        + D V KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I ++L  LPF++C+H +STVD QPS     +L+FVSG+L+L  EEH L+FSQMF
Subjt:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF

Query:  HLVPTAQGNLCVQNDIFRLNY
        HL+PT QG+  V NDIFRLNY
Subjt:  HLVPTAQGNLCVQNDIFRLNY

Q9FZK4 Nuclear transport factor 2A7.6e-3558.68Show/hide
Query:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF
        + D V KAFVEHYY  FD  RP L +LYQ  SMLTFEGQ+I G  +I ++L  LPF++C+H ++TVD QPS   G +L+FVSG+L+L  E+H L+FSQMF
Subjt:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF

Query:  HLVPTAQGNLCVQNDIFRLNY
        HL+ + QGN  V NDIFRLNY
Subjt:  HLVPTAQGNLCVQNDIFRLNY

Q9XJ54 Nuclear transport factor 23.1e-3660.66Show/hide
Query:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF
        +AD V KAFVEHYY+ FD  RP+L +LYQ  SMLTFEGQQ LG   I+ +L  LPF +C H ++TVD QPS   G +L+FVSGSL    +EH L+FSQMF
Subjt:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF

Query:  HLVPTAQGNLCVQNDIFRLNYG
         L+P A GN  VQND+FRLNYG
Subjt:  HLVPTAQGNLCVQNDIFRLNYG

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like2.4e-3160.19Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVP---GSILIFVSGSLELPDEEHHL
        +EEE   V  AFV HYY LFDN+R SLS+LY P S+LTFEGQ I GVD+IS++L+QLPF++C H++STVD+QPS++    G IL+FVSGS++L  E+H L
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVP---GSILIFVSGSLELPDEEHHL

Query:  RFSQMFHL
        RFSQ++ L
Subjt:  RFSQMFHL

AT1G11570.2 NTF2-like1.9e-4161.72Show/hide
Query:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVP---GSILIFVSGSLELPDEEHHL
        +EEE   V  AFV HYY LFDN+R SLS+LY P S+LTFEGQ I GVD+IS++L+QLPF++C H++STVD+QPS++    G IL+FVSGS++L  E+H L
Subjt:  MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVP---GSILIFVSGSLELPDEEHHL

Query:  RFSQMFHLVPTAQGNLCVQNDIFRLNYG
        RFSQ FHL+P  QG+  VQN++FRLNYG
Subjt:  RFSQMFHLVPTAQGNLCVQNDIFRLNYG

AT1G27310.1 nuclear transport factor 2A5.4e-3658.68Show/hide
Query:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF
        + D V KAFVEHYY  FD  RP L +LYQ  SMLTFEGQ+I G  +I ++L  LPF++C+H ++TVD QPS   G +L+FVSG+L+L  E+H L+FSQMF
Subjt:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF

Query:  HLVPTAQGNLCVQNDIFRLNY
        HL+ + QGN  V NDIFRLNY
Subjt:  HLVPTAQGNLCVQNDIFRLNY

AT1G27970.1 nuclear transport factor 2B4.4e-3860.33Show/hide
Query:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF
        + D V KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I ++L  LPF++C+H +STVD QPS     +L+FVSG+L+L  EEH L+FSQMF
Subjt:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF

Query:  HLVPTAQGNLCVQNDIFRLNY
        HL+PT QG+  V NDIFRLNY
Subjt:  HLVPTAQGNLCVQNDIFRLNY

AT1G27970.2 nuclear transport factor 2B2.1e-3558.97Show/hide
Query:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF
        + D V KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I ++L  LPF++C+H +STVD QPS     +L+FVSG+L+L  EEH L+FSQMF
Subjt:  EADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMF

Query:  HLVPTAQGNLCVQNDIF
        HL+PT QG+  V NDIF
Subjt:  HLVPTAQGNLCVQNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGAGGCTGATATAGTGGGGAAGGCGTTCGTGGAACATTATTACCAATTGTTCGACAATGAAAGACCATCCCTTTCCACTTTGTACCAACCTGACTCCATGCT
CACTTTCGAGGGGCAGCAAATATTAGGCGTTGATGACATCTCCTCCAGGCTTCAGCAGCTGCCATTCGAACGTTGCCGGCATGTCGTCAGCACTGTCGACACGCAGCCCT
CCGCCGTCCCTGGCTCCATCCTCATCTTCGTCAGCGGCAGTCTCGAGCTGCCCGATGAAGAACACCATCTCAGATTCAGCCAGATGTTTCACTTGGTACCCACCGCACAG
GGCAACCTTTGCGTTCAGAACGACATATTTCGCCTCAATTACGGTTAG
mRNA sequenceShow/hide mRNA sequence
TCCCCCCTCCTCCATGCACTTGAAAAAACAGAGCATTATATAATCAGCAGAGAATAAAAGGGTTTTGAGTTACAAGCCCCTGTTTTTGTTGCAGAGTAAGAGATGGAAGA
AGAGGCTGATATAGTGGGGAAGGCGTTCGTGGAACATTATTACCAATTGTTCGACAATGAAAGACCATCCCTTTCCACTTTGTACCAACCTGACTCCATGCTCACTTTCG
AGGGGCAGCAAATATTAGGCGTTGATGACATCTCCTCCAGGCTTCAGCAGCTGCCATTCGAACGTTGCCGGCATGTCGTCAGCACTGTCGACACGCAGCCCTCCGCCGTC
CCTGGCTCCATCCTCATCTTCGTCAGCGGCAGTCTCGAGCTGCCCGATGAAGAACACCATCTCAGATTCAGCCAGATGTTTCACTTGGTACCCACCGCACAGGGCAACCT
TTGCGTTCAGAACGACATATTTCGCCTCAATTACGGTTAGTTCATTTCAGGGCTTCTTCGAGCTTACATTTCAAGAATGAAACGCTGTCGTTTAATGGGATGTAGTTTGT
ATTCTGCCTCTGATCTAAATATATTTCATTCTGTTATGTGTTCTATGTCAAATATCTTTATTATTTTTGGGCTTAGGATTTGGGCCCAATAACATCTAGACTATGGGCTT
GGTCGGCCCAATTATCGCGTCAAACAGGCCCCTAGTCATAAATGGGCTGTTATATTGTTGCGTTGGCGAATGAACATTATTTAGTGTAAACTTTTACACTAAATC
Protein sequenceShow/hide protein sequence
MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFERCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQ
GNLCVQNDIFRLNYG