CuGenDBv2

Gene ID	Carg07631
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	28S ribosomal protein S33, mitochondrial
Genome location	Carg_Chr13:8224767..8225419
RNA-Seq Expression	Carg07631
Synteny	Carg07631
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

3.2e-47

92.59

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Query:  GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG
        GK EERMATNSLK MIAAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.3e-51

100

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Query:  GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG
        GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

XP_022923929.1 28S ribosomal protein S33, mitochondrial [Cucurbita moschata]

2.5e-47

100

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

5.5e-47

99.02

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKGMIAAA+NKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

3.2e-47

92.59

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Query:  GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG
        GK EERMATNSLK MIAAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

7.3e-45

93.14

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A1S3B0S3 28S ribosomal protein S33, mitochondrial

1.2e-44

93.14

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAA++KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

1.2e-44

93.14

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAA++KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

1.2e-47

100

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

2.7e-47

99.02

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKGMIAAA+NKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

7.1e-05

41.11

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Query:  VTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPY-DIKK--------DDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G R+  K+L ++L G  VA +Y   DI K         D   +  +EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPY-DIKK--------DDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

1.1e-40

77.45

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Query:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLK +I++A+ +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVAEWYPYDIK +DP ++AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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GGAAAACTTGAAGAGAGGATGGCTACGAATAGCCTGAAGGGTATGATTGCTGCAGCACTCAATAAGGGAGTAACAGAAGCAAGGGCAAGGATATTTGGTCACGTACTTAA
CCCGACAGGTCAACGATCTACCCACAAGCTTCTGCGCAAAAAACTCATCGGTGACAAAGTAGCAGAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTTATCATGG
CTCGTCAAGAACAAGAGCGCTTGTCGAAGCTTGAAATGCTGAAGCGGCGTGGTAAGGGACCACCTAAGAAGGGTCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAG

mRNA sequence

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Protein sequence

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GKLEERMATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIKKDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

Carg07631 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome