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Carg07654 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07654
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationCarg_Chr13:8315676..8316068
RNA-Seq ExpressionCarg07654
SyntenyCarg07654
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584197.1 hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sororia]7.6e-67100Show/hide
Query:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
        MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
Subjt:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE

Query:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
        ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
Subjt:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]3.5e-4879.26Show/hide
Query:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG
        MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDG
Subjt:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG

Query:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN
        FREA+ GGGR+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN

XP_022923731.1 uncharacterized protein LOC111431350 [Cucurbita moschata]7.6e-67100Show/hide
Query:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
        MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
Subjt:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE

Query:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
        ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
Subjt:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN

XP_023001654.1 uncharacterized protein LOC111495727 [Cucurbita maxima]1.2e-6497.69Show/hide
Query:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
        MKNK VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSV GMRRWDFGQSLWDSYEIVAVSKKLE GLVLDGDGFRE
Subjt:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE

Query:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
        ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
Subjt:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN

XP_023519325.1 uncharacterized protein LOC111782756 [Cucurbita pepo subsp. pepo]2.9e-6699.23Show/hide
Query:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
        MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
Subjt:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE

Query:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
        A+GGGRNQRKQRESCNSLRNLFNRTSRRFN
Subjt:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein1.7e-4879.26Show/hide
Query:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG
        MK KP    + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFK+EAIRSR+S    RRWDF QSLWDSYEIV VSKKLE GLVLDGDG
Subjt:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG

Query:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN
        FREA+ GGGR+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN

A0A1S3AX17 uncharacterized protein LOC1034838296.5e-4878.52Show/hide
Query:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG
        MK KP    + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIRSR++    RRWDF QSLWDSYEIV VSKKLE GLVLDGDG
Subjt:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG

Query:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN
        FREA+ GGGR+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN

A0A5A7UNW1 Uncharacterized protein6.5e-4878.52Show/hide
Query:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG
        MK KP    + D D HLEILKAVAQAW +HTGTSKPASEFDAHRRN R  PSRFKLEAIRSR++    RRWDF QSLWDSYEIV VSKKLE GLVLDGDG
Subjt:  MKNKP---VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDG

Query:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN
        FREA+ GGGR+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  FREAD-GGGRNQRKQRESCNSLRNLFNR-TSRRFN

A0A6J1E7J5 uncharacterized protein LOC1114313503.7e-67100Show/hide
Query:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
        MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
Subjt:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE

Query:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
        ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
Subjt:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN

A0A6J1KNC1 uncharacterized protein LOC1114957275.9e-6597.69Show/hide
Query:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE
        MKNK VVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSV GMRRWDFGQSLWDSYEIVAVSKKLE GLVLDGDGFRE
Subjt:  MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFRE

Query:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
        ADGGGRNQRKQRESCNSLRNLFNRTSRRFN
Subjt:  ADGGGRNQRKQRESCNSLRNLFNRTSRRFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein8.8e-2144.36Show/hide
Query:  KNKPVVEDEDGHLEILKAVAQAWQSHTGTSK-PASEFDAHRRNC--RANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGF
        +N+   E++   LE++KA AQAW SH+ TSK    EFDA R++   +   SRFK EA+ ++     +  W+FGQSLWD YEI++VSKKLE  L L+   F
Subjt:  KNKPVVEDEDGHLEILKAVAQAWQSHTGTSK-PASEFDAHRRNC--RANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGF

Query:  READGGG---RNQRKQRESCNSLRNLFNRTSRR
          +D  G     ++K R+S NSLR+LF R+S +
Subjt:  READGGG---RNQRKQRESCNSLRNLFNRTSRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATT
CGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGCGGCATGAGGAGATGGGACTTCGGGCAGTCGC
TGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCGATGGCGGTGGGCGGAATCAGAGGAAA
CAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACAAACCAGTGGTTGAAGACGAGGATGGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCATGGCAGAGTCACACCGGTACTTCAAAGCCTGCAAGTGAATT
CGACGCCCATCGCCGCAATTGCAGAGCCAATCCATCTCGGTTCAAGCTTGAGGCGATACGAAGCCGGTCTTCCGTCGGCGGCATGAGGAGATGGGACTTCGGGCAGTCGC
TGTGGGATTCGTATGAGATTGTGGCGGTTTCGAAGAAGCTGGAGACGGGGTTGGTGCTCGACGGCGACGGGTTTCGAGAGGCCGATGGCGGTGGGCGGAATCAGAGGAAA
CAGCGAGAGAGTTGTAATAGTTTGAGAAATTTGTTCAATAGAACTTCGAGGAGATTCAATTAG
Protein sequenceShow/hide protein sequence
MKNKPVVEDEDGHLEILKAVAQAWQSHTGTSKPASEFDAHRRNCRANPSRFKLEAIRSRSSVGGMRRWDFGQSLWDSYEIVAVSKKLETGLVLDGDGFREADGGGRNQRK
QRESCNSLRNLFNRTSRRFN