CuGenDBv2

Gene ID	Carg07804
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ribosomal RNA-processing protein 17
Genome location	Carg_Chr07:1250682..1253277
RNA-Seq Expression	Carg07804
Synteny	Carg07804
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594625.1 hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia]

7.9e-92

99.49

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEI+PIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-92

100

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

6.7e-91

97.98

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETT YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

XP_023003425.1 ribosomal RNA-processing protein 17 [Cucurbita maxima]

2.8e-89

95.96

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETTTYDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

4.7e-92

99.49

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

1.1e-67

77.5

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVLHGGVLPADR VD+QND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        D      +EEE PLAP+SE TTYD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LP+TKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

1.3e-68

78.79

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKN+ EEGG L QPHARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EK+LVL+GGVLPADR VD+QND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        D     EDEEE PLAP SE  TYD+GN+KVTVTTSEV R+ EIDPIDKPQ + +QLL KDKKH+LP+TKKK FKKVA+++SR K RSK DKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

1.1e-70

81.31

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        D     E+EEE+P APISETTTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

3.3e-91

97.98

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETT YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

1.4e-89

95.96

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND
        MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETTTYDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

1.2e-32

54.45

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Query:  EEGGALTQP-HARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDG
        EE G+L  P  ARHI K+A KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RK+E+ +V   G    D   +++ D     
Subjt:  EEGGALTQP-HARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDG

Query:  DEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPI--DKPQASTSQLLAK-DKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKK
         EDEE  P A  S TT YD+G +KVTVTTSE+ R+EE +PI  +K Q++ S   AK   K  +PV K KP K+ +R++S +K+  K DKKK
Subjt:  DEDEEERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPI--DKPQASTSQLLAK-DKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKK

Sequences

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CDS sequence

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ATGGTGAAGAACGAAGCGGAGGAAGGGGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAA
AGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCA
AAAAGAGAAAAATAGAAAAAGAACTGGTACTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAATGATGATCTCAAGGACGGGGATGAGGATGAGGAA
GAGAGGCCATTGGCACCAATTTCTGAGACAACAACGTACGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATCGATCCCATTGA
CAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAGTTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAA
AGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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Protein sequence

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MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKELVLHGGVLPADRPVDEQNDDLKDGDEDEE
ERPLAPISETTTYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPVTKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

Carg07804 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome