; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg07850 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07850
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionperoxisomal membrane protein PMP22
Genome locationCarg_Chr07:1440979..1444841
RNA-Seq ExpressionCarg07850
SyntenyCarg07850
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007248 - Mpv17/PMP22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026639.1 Peroxisomal membrane protein PMP22 [Cucurbita argyrosperma subsp. argyrosperma]6.0e-61100Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKGNIFESSSQI
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKGNIFESSSQI
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKGNIFESSSQI

Query:  LDGEQILGEFRIYELSMAGEIHAPS
        LDGEQILGEFRIYELSMAGEIHAPS
Subjt:  LDGEQILGEFRIYELSMAGEIHAPS

XP_022926895.1 peroxisomal membrane protein PMP22 isoform X1 [Cucurbita moschata]2.0e-40100Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

XP_023517819.1 peroxisomal membrane protein PMP22 isoform X1 [Cucurbita pepo subsp. pepo]7.6e-4098.89Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKL GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

XP_023517825.1 peroxisomal membrane protein PMP22 isoform X2 [Cucurbita pepo subsp. pepo]7.6e-4098.89Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKL GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

XP_023517826.1 peroxisomal membrane protein PMP22 isoform X3 [Cucurbita pepo subsp. pepo]7.6e-4098.89Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKL GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

TrEMBL top hitse value%identityAlignment
A0A5D3CNV5 Peroxisomal membrane protein PMP222.0e-3384.27Show/hide
Query:  SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        SLAKK   KY+SQL QHPLRTKVITSGVL+A+SDVTSQKL GIQKLQL+RILLKVLYGCLYLGPF H+LHQIL+KIF GKRD+KTVAKK
Subjt:  SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

A0A6J1EMD3 peroxisomal membrane protein PMP22 isoform X19.7e-41100Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

A0A6J1KN09 peroxisomal membrane protein PMP22 isoform X36.3e-4096.67Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVL+AI+DVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQIL+KIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

A0A6J1KQP4 peroxisomal membrane protein PMP22 isoform X26.3e-4096.67Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVL+AI+DVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQIL+KIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

A0A6J1KS76 peroxisomal membrane protein PMP22 isoform X16.3e-4096.67Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        MSLAKKAFEKYVSQLYQHPLRTKVITSGVL+AI+DVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQIL+KIFQGKRDSKTVAKK
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

SwissProt top hitse value%identityAlignment
P19258 Protein Mpv179.1e-0432.88Show/hide
Query:  YVSQLYQHPLRTKVITSGVLIAISDVTSQKLI---GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQG
        Y   L  HP + +V+T+G L+ + D+ SQ+L+   G+Q+ Q  R L  V  GC ++GP     +++L+ +  G
Subjt:  YVSQLYQHPLRTKVITSGVLIAISDVTSQKLI---GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQG

P39210 Protein Mpv177.0e-0432.88Show/hide
Query:  YVSQLYQHPLRTKVITSGVLIAISDVTSQKLI---GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQG
        Y   L  HP + +V+T+G L+ + D+ SQ+L+   G+Q+ Q  R L  V  GC ++GP     +++L++   G
Subjt:  YVSQLYQHPLRTKVITSGVLIAISDVTSQKLI---GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQG

P42925 Peroxisomal membrane protein 29.1e-0430.38Show/hide
Query:  SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQK-----LQLRRILLKVLYGCLYLGPFGHFLHQILE
        SL K+A  +Y+  L  +P+ TK ++SG+L A+ ++ +Q +   Q+     L++  +L  ++YG    GP  H+L+  +E
Subjt:  SLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQK-----LQLRRILLKVLYGCLYLGPFGHFLHQILE

Q54GD8 PXMP2/4 family protein 35.3e-0431.33Show/hide
Query:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRD
        +SL       Y+ +L   P++TK +TS  L  IS V +QK I  +K+    ++   ++G L   P  H+ H IL+++F+  +D
Subjt:  MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRD

Q9ZS51 Peroxisomal membrane protein PMP221.6e-2462.79Show/hide
Query:  KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        K   ++Y+SQL QHPLRTK IT+GVL  +SDV SQKL GIQK+QLRR+LLKV++   +LGP GHF H  L+K F+GK+D++TVAKK
Subjt:  KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

Arabidopsis top hitse value%identityAlignment
AT4G04470.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein1.1e-2562.79Show/hide
Query:  KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        K   ++Y+SQL QHPLRTK IT+GVL  +SDV SQKL GIQK+QLRR+LLKV++   +LGP GHF H  L+K F+GK+D++TVAKK
Subjt:  KKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

AT4G14305.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein3.1e-2355.68Show/hide
Query:  LAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        LAK A+ KY+ QL  HPLRTK IT+GVL   SD  +QK+ G++++Q RR+LL +LYG  Y GPFGHF H++++ IF+GK+ + TVAKK
Subjt:  LAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

AT4G14305.2 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein2.6e-1452.38Show/hide
Query:  GVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK
        GVL   SD  +QK+ G++++Q RR+LL +LYG  Y GPFGHF H++++ IF+GK+ + TVAKK
Subjt:  GVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKK

AT5G43140.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein6.5e-0532.14Show/hide
Query:  YVSQLYQHPLRTKVITSGVLIAISDVTSQKLI--GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKGNIFESSSQILDGEQILG
        Y+ +L  HP  TK IT+ V+   +D+TSQ +         L R      +G ++LGP  H     L KI   KRD  T  KK        Q+L G     
Subjt:  YVSQLYQHPLRTKVITSGVLIAISDVTSQKLI--GIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKGNIFESSSQILDGEQILG

Query:  EFRIYELSMAGE
         F  Y  ++ GE
Subjt:  EFRIYELSMAGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGTAATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGAC
TTCCCAGAAACTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGCTTTATGGATGTCTTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATAC
TTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGGGAATATTTTTGAATCTTCGAGCCAAATCCTTGACGGTGAACAAATCTTAGGGGAGTTT
AGGATATATGAATTGTCCATGGCAGGTGAAATCCATGCTCCTTCTTAG
mRNA sequenceShow/hide mRNA sequence
AAGCCATTGGAAGAATTACAGAGCTTCTTGAATTGGAATGGCAATGGTGGTGGGGTGGTTTTATAGAGTATACGAATTGAAGGGTCAGAATTCAGATACGAAGAAATTCA
GAATCCGGGCTGAATTGACTCGGCCCGTTTGCTGACTCCTGACTCGTTCCCTCTTTTCATTCGTTGAAAAATATTACATCTCCTCGCTATTCTATTGTAATGGGTGAAAC
GACGTCGTGTTAATGTCAAAGGCGGAGGGGATGATAATTCTTGACCGGGCTGGTTAGAATGAGATTGCCCCAAATGACCGCGATCTCTTGGTTCATTTTCCCTCGTGTTT
TGGGGGTTGTTGGCAACCATGTGGCCCCCCGTTAAGCCACAGATATTTTGAAGAAGCGGACGATAAGATTTGATGAACTACAGTGATGAAAACGGAGAGTGTTAACTCAA
ACCTTCATCGCTGGGAGAAGAAGCAAAGAGAAAGAAACAATGTCTCTTGCGAAGAAGGCGTTTGAGAAGTATGTTTCGCAGCTTTACCAGCATCCTTTGAGAACCAAGGT
AATCACTTCAGGAGTATTGATTGCGATAAGCGATGTGACTTCCCAGAAACTTATTGGCATACAGAAACTTCAGTTGAGACGAATTCTTCTCAAAGTGCTTTATGGATGTC
TTTACCTTGGACCATTTGGCCATTTTCTTCACCAAATACTTGAAAAGATCTTCCAGGGGAAAAGAGACTCAAAAACAGTTGCCAAGAAGGGGAATATTTTTGAATCTTCG
AGCCAAATCCTTGACGGTGAACAAATCTTAGGGGAGTTTAGGATATATGAATTGTCCATGGCAGGTGAAATCCATGCTCCTTCTTAGTACTTATGTAAGCATTTCTCCCC
AGTGCCAGAACTTGATTGTTGAACTAAATGCATCTGCCAATCATCACCCTCTTGTTTACCTTTACCCAGGAAATAGAAATTCGAAGACGATTATGATTGAGACGGTCGAT
TTCGATGATAATCATGTATATAATGATTATCTTAAACCAACTCGATATCAAACAAGATAAAAATGACATACTTGTAGTATAGTATCTACCGAACAGATATGAACGAAGAT
GATAATTTGATATTGTTAAACAGTCCTGTTTTCAACATAGCAGACTCTTAGTTTCTATAGCTCAATTATGAGTTTTTGTTTTGTTTTTGGATAGCAATGGCGTCATTTTC
CAATAATTCCACAAATTTGGGCTTGAATGAGAGAGACAGAACAAGAAAAGCTGAATGGGTTGGTCAATTTCTGCTTTTC
Protein sequenceShow/hide protein sequence
MSLAKKAFEKYVSQLYQHPLRTKVITSGVLIAISDVTSQKLIGIQKLQLRRILLKVLYGCLYLGPFGHFLHQILEKIFQGKRDSKTVAKKGNIFESSSQILDGEQILGEF
RIYELSMAGEIHAPS