CuGenDBv2

Gene ID	Carg07858
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	Carg_Chr07:1469982..1471368
RNA-Seq Expression	Carg07858
Synteny	Carg07858
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594678.1 Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-89

87.31

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
                SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-105

100

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

XP_022926897.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata]

1.8e-88

86.8

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKA ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
                SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

1.3e-86

85.28

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPSLFP PNLNRSNFNPVWPKK  ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
                SYNPEAH ELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

8.5e-86

84.26

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPS+FP PNLNR NFNPVWP+K  ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
                SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B054 uncharacterized protein LOC103484635

5.7e-72

74.75

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK
                SYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK

A0A5D3CNU4 Chaperonin-like RBCX protein 1

5.7e-72

74.75

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK
                SYNPEA+ ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

1.2e-72

75.9

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASK--SLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAML
        MES AR+LSPT FPSLFP PNLNRS   P+WP K  ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLE               
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASK--SLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAML

Query:  LVLILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP
                  SYNPEAH ELMEFLDRHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  LVLILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

8.8e-89

86.8

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKA ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
                SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

6.3e-87

85.28

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MESCARILSPTHFPSLFP PNLNRSNFNPVWPKK  ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
                SYNPEAH ELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

9.5e-48

56.25

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS
                SYNPEA+ EL EFLD +S++DGDKF + LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLA K V +SNTRLMREYV ETS
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

6.7e-49

56.25

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV
        MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLV

Query:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS
                SYNPEA+ EL EFLD +S++DGDKF + LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLA K V +SNTRLMREYV ETS
Subjt:  LILVLVEQSYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS

Sequences

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CDS sequence

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ATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGGAGC
TTCCAAGTCCTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTG
CTGTTAGGATCGTGACTGCGCAGCTTGAGGTTGCTCTTCAATTATTACTCTGTTTTAATTGCTCTGCAATGTTGTTGGTATTGATTCTTGTTCTGGTAGAACAGAGCTAC
AATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCT
CGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCTTCCAAAATGGTTGGTGAATCTAACACGAGACTGA
TGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGA

mRNA sequence

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TATTTTCAAGAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTGTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGG
ATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGGAGCTTCCAAGTCCTTGCGCTT
GCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTGACTG
CGCAGCTTGAGGTTGCTCTTCAATTATTACTCTGTTTTAATTGCTCTGCAATGTTGTTGGTATTGATTCTTGTTCTGGTAGAACAGAGCTACAATCCAGAGGCGCACGCA
GAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGCATTGCGCATACTAGA
GGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCGATTAGCTTCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAG
AGACGAGTCCAGATGCCGAAAAGTGAGGAAATTCTGCACCTTCTGTTTTTGCTATTATTATACATGAATTCAGTGTATTTATAATATGATCATGCCACTCCACTTGTTGG
GGCTTTGTTCCAAACAAAAATTGGTAAACTCAATCATGGAAATATATACAGATTGAATTGTTCTTGTGAGTTACAAAATGTCATAATGAAATAGAACAGACAATAGTTCT
CTGAAATCTTAGCACTAAGCCTCAATCTCTAAGCTCACAACAGACCTACATCGTAGCTAACTATAATAAGCATCACTTTGATGTTCTGAAGTAAGCTCCAATAGTGACTA
ACAAAAAC

Protein sequence

Show/hide protein sequence

MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAGASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLEVALQLLLCFNCSAMLLVLILVLVEQSY
NPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

Carg07858 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome