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Carg07899 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07899
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerases IV and V subunit 4-like
Genome locationCarg_Chr07:1614334..1615767
RNA-Seq ExpressionCarg07899
SyntenyCarg07899
Gene Ontology termsGO:0006352 - DNA-templated transcription, initiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030880 - RNA polymerase complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594716.1 DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma subsp. sororia]6.2e-1073.47Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDTTDEVFALVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
KAG7026686.1 DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-47100Show/hide
Query:  MDGNKLCTTVELCFCTNPALLVCCIVLFFLVHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAERMPLPGE
        MDGNKLCTTVELCFCTNPALLVCCIVLFFLVHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAERMPLPGE
Subjt:  MDGNKLCTTVELCFCTNPALLVCCIVLFFLVHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAERMPLPGE
XP_022926859.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Cucurbita moschata]1.4e-0971.43Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDTTDEVF+LVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
XP_023517145.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita pepo subsp. pepo]6.2e-1073.47Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDTTDEVFALVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
XP_023517147.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Cucurbita pepo subsp. pepo]6.2e-1073.47Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDTTDEVFALVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
TrEMBL top hitse value%identityAlignment
A0A0A0KH45 RPOL4c domain-containing protein2.5e-0972.34Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLK
        H  + E +     TLKKYGV DSEICVIANVCPDTTDEVFAL+PSLK
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLK
A0A1S3B2C2 DNA-directed RNA polymerases IV and V subunit 4 isoform X13.3e-0970.21Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLK
        H  + E +     TLKKYG+ DSEICVIANVCPDTTDEVFAL+PSLK
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLK
A0A6J1EGC4 DNA-directed RNA polymerases IV and V subunit 4-like isoform X26.6e-1071.43Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDTTDEVF+LVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
A0A6J1EJD9 DNA-directed RNA polymerases IV and V subunit 4-like isoform X16.6e-1071.43Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDTTDEVF+LVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
A0A6J1KMD1 DNA-directed RNA polymerases IV and V subunit 4-like1.5e-0971.43Show/hide
Query:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        H  + E +     TLKKYGVADSEICVIANVCPDT DEVFALVPSLK +
Subjt:  HSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
SwissProt top hitse value%identityAlignment
O48890 DNA-directed RNA polymerase II subunit 41.8e-0440.48Show/hide
Query:  LKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAE
        L ++ + + E+CV+ N+CP+T +E  A+VPSLK + R +  E
Subjt:  LKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAE
Q6DBA5 DNA-directed RNA polymerases IV and V subunit 42.8e-0542Show/hide
Query:  VHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        VH  + + + +    LK YG++D E+CVIAN   ++ DEV A +PSLK +
Subjt:  VHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
Arabidopsis top hitse value%identityAlignment
AT4G15950.1 RNA polymerase II, Rpb4, core protein2.0e-0642Show/hide
Query:  VHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
        VH  + + + +    LK YG++D E+CVIAN   ++ DEV A +PSLK +
Subjt:  VHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCR
AT5G09920.1 RNA polymerase II, Rpb4, core protein1.3e-0540.48Show/hide
Query:  LKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAE
        L ++ + + E+CV+ N+CP+T +E  A+VPSLK + R +  E
Subjt:  LKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAAACAAATTATGTACTACTGTGGAACTATGCTTTTGTACCAATCCAGCACTCCTAGTGTGCTGTATAGTGCTCTTTTTCTTAGTCCATTCAAACTCTGTTGA
GTGCTTAACTGAAGATTCTAGAACCCTCAAGAAATATGGTGTAGCGGACAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTG
TTCCATCTTTGAAGTGTAGAAATAGGGGCTACTCTGCTGAGAGAATGCCTCTCCCAGGTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAAACAAATTATGTACTACTGTGGAACTATGCTTTTGTACCAATCCAGCACTCCTAGTGTGCTGTATAGTGCTCTTTTTCTTAGTCCATTCAAACTCTGTTGA
GTGCTTAACTGAAGATTCTAGAACCCTCAAGAAATATGGTGTAGCGGACAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTG
TTCCATCTTTGAAGTGTAGAAATAGGGGCTACTCTGCTGAGAGAATGCCTCTCCCAGGTGAATGA
Protein sequenceShow/hide protein sequence
MDGNKLCTTVELCFCTNPALLVCCIVLFFLVHSNSVECLTEDSRTLKKYGVADSEICVIANVCPDTTDEVFALVPSLKCRNRGYSAERMPLPGE