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Carg07993 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg07993
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Genome locationCarg_Chr04:1634722..1635635
RNA-Seq ExpressionCarg07993
SyntenyCarg07993
Gene Ontology termsNA
InterPro domainsIPR044705 - COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600149.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-6897.83Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFE
        MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNN AVSGLLRRRCQQVHRVWK LSEVACCRFLIVGYDEMCIF+
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFE

Query:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
        VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
Subjt:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE

KAG7030817.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-71100Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFE
        MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFE
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFE

Query:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
        VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE
Subjt:  VGFAAESAAGDGEAEHVEAGKLMQGLLYQGILKSQARE

XP_022956789.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata]9.3e-3144.5Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SLLVVLFN  AVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------

Query:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA
                                                R C         ++  VWK LSEV CCR L+V YD MCIF+VGFAAESA GDGEAEHVEA
Subjt:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQG LY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

XP_022984820.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima]1.9e-3144.95Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SLLVVLFN  AVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------

Query:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA
                                                R C         ++  VWK LSEV CCR L+V YD MCIF+VGFAAESA GDGEAEHVEA
Subjt:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQGLLY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

XP_023513804.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo]1.8e-2943.12Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SLLVVLFN  AVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------

Query:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA
                                                R C         ++  VWK LSEV CCR L++ YD MCIF+VGFAAESA GDG+ EHVEA
Subjt:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQG LY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

TrEMBL top hitse value%identityAlignment
A0A0A0KQF1 Uncharacterized protein1.4e-2742.2Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRTYVGGVSLLVVLFNNCAVSGLL---------
        MEAGI FP T IPW+ NF  T  ++R SFP IVRASSS+S                           L  YVGG+SLL+VLFN  AVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRTYVGGVSLLVVLFNNCAVSGLL---------

Query:  ---------------------------------------RRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA
                                                R C         ++  VWK LSEV CCR L+V YD  CIF+VGFAAESA G+GEAEHVEA
Subjt:  ---------------------------------------RRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
        GKLMQG LY+G+LKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

A0A6J1DBC0 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X29.4e-2940.79Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLLVVLFNNCAVSGL
        MEAGI F    I WSPNF C LC VRRSFPRI+RASSSSSS                                    L  +VGG+SLLVVLFN  AVSG+
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLLVVLFNNCAVSGL

Query:  ------------------------------------------------LRRRCQ--------QVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAA
                                                         +R C         ++  VW+ LSEV CCR L+V YD MC+F+VGFAAES  
Subjt:  ------------------------------------------------LRRRCQ--------QVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAA

Query:  GDGEAEHVEAGKLMQGLLYQGILKSQAR
        GDGEAEHV+A +LMQG LYQGI KS+A+
Subjt:  GDGEAEHVEAGKLMQGLLYQGILKSQAR

A0A6J1DCN6 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X19.4e-2940.79Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLLVVLFNNCAVSGL
        MEAGI F    I WSPNF C LC VRRSFPRI+RASSSSSS                                    L  +VGG+SLLVVLFN  AVSG+
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-----------------------------------LLRTYVGGVSLLVVLFNNCAVSGL

Query:  ------------------------------------------------LRRRCQ--------QVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAA
                                                         +R C         ++  VW+ LSEV CCR L+V YD MC+F+VGFAAES  
Subjt:  ------------------------------------------------LRRRCQ--------QVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAA

Query:  GDGEAEHVEAGKLMQGLLYQGILKSQAR
        GDGEAEHV+A +LMQG LYQGI KS+A+
Subjt:  GDGEAEHVEAGKLMQGLLYQGILKSQAR

A0A6J1H029 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic4.5e-3144.5Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SLLVVLFN  AVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------

Query:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA
                                                R C         ++  VWK LSEV CCR L+V YD MCIF+VGFAAESA GDGEAEHVEA
Subjt:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQG LY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

A0A6J1J9M5 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic9.1e-3244.95Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------
        MEAGI FP T I WS +  CTLC VRRSFPRI+RASS +S                           L  YVGG+SLLVVLFN  AVSG+          
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSL-------------------------LRTYVGGVSLLVVLFNNCAVSGL----------

Query:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA
                                                R C         ++  VWK LSEV CCR L+V YD MCIF+VGFAAESA GDGEAEHVEA
Subjt:  --------------------------------------LRRRC--------QQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHVEA

Query:  GKLMQGLLYQGILKSQAR
         KLMQGLLY+GILKSQA+
Subjt:  GKLMQGLLYQGILKSQAR

SwissProt top hitse value%identityAlignment
Q6NQK9 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic1.4e-0827.73Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLLVVLFN--------------
        MEA I+     IPWS N   +   +   FPR +RASSSS+S                         L+R+   YVGG SLL VLFN              
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLLVVLFN--------------

Query:  ----------NCAVSGLLRR-------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHV
                    AV+ LL                      C+ V               W+ L    CC+ L++ Y+ +C+ ++G  AES   D +   V
Subjt:  ----------NCAVSGLLRR-------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHV

Query:  EAGKLMQGLLYQGILKSQAR
        +  KLMQG +Y+G++KS+A+
Subjt:  EAGKLMQGLLYQGILKSQAR

Arabidopsis top hitse value%identityAlignment
AT1G59840.1 cofactor assembly of complex C9.6e-1027.73Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLLVVLFN--------------
        MEA I+     IPWS N   +   +   FPR +RASSSS+S                         L+R+   YVGG SLL VLFN              
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLLVVLFN--------------

Query:  ----------NCAVSGLLRR-------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHV
                    AV+ LL                      C+ V               W+ L    CC+ L++ Y+ +C+ ++G  AES   D +   V
Subjt:  ----------NCAVSGLLRR-------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHV

Query:  EAGKLMQGLLYQGILKSQAR
        +  KLMQG +Y+G++KS+A+
Subjt:  EAGKLMQGLLYQGILKSQAR

AT1G59840.2 cofactor assembly of complex C9.6e-1027.73Show/hide
Query:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLLVVLFN--------------
        MEA I+     IPWS N   +   +   FPR +RASSSS+S                         L+R+   YVGG SLL VLFN              
Subjt:  MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSS-------------------------LLRT---YVGGVSLLVVLFN--------------

Query:  ----------NCAVSGLLRR-------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHV
                    AV+ LL                      C+ V               W+ L    CC+ L++ Y+ +C+ ++G  AES   D +   V
Subjt:  ----------NCAVSGLLRR-------------------RCQQVHR------------VWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAGDGEAEHV

Query:  EAGKLMQGLLYQGILKSQAR
        +  KLMQG +Y+G++KS+A+
Subjt:  EAGKLMQGLLYQGILKSQAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTC
TTCTTCTTCCTCGCTCTTGCGCACATACGTCGGTGGAGTTTCTCTCTTAGTCGTTCTCTTTAATAATTGCGCTGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTC
ATCGGGTATGGAAGTGTCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTGAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGT
GATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCGGGAATTCTCTTCCCCGCCACTCTAATTCCATGGAGTCCCAATTTCAACTGCACTCTCTGCACTGTTCGTCGCTCTTTCCCGCGCATCGTAAGGGCTTCTTC
TTCTTCTTCCTCGCTCTTGCGCACATACGTCGGTGGAGTTTCTCTCTTAGTCGTTCTCTTTAATAATTGCGCTGTTTCTGGATTGCTCCGTCGCCGATGCCAGCAGGTTC
ATCGGGTATGGAAGTGTCTGTCAGAGGTGGCATGCTGCAGGTTTTTGATTGTTGGTTATGATGAGATGTGTATATTTGAAGTTGGTTTTGCTGCTGAATCAGCTGCGGGT
GATGGTGAGGCCGAACATGTGGAAGCTGGTAAATTGATGCAGGGATTGCTCTATCAAGGAATTCTCAAATCTCAAGCTCGTGAGTAG
Protein sequenceShow/hide protein sequence
MEAGILFPATLIPWSPNFNCTLCTVRRSFPRIVRASSSSSSLLRTYVGGVSLLVVLFNNCAVSGLLRRRCQQVHRVWKCLSEVACCRFLIVGYDEMCIFEVGFAAESAAG
DGEAEHVEAGKLMQGLLYQGILKSQARE