; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg08004 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg08004
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationCarg_Chr04:1691864..1694125
RNA-Seq ExpressionCarg08004
SyntenyCarg08004
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600161.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.1e-98100Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLK
        SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLK
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLK

XP_022941727.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata]4.2e-101100Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
        SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

XP_022973018.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]6.2e-9796.95Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQIIHHSPSSFTRKPYHLPK PL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
        SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-10099.49Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQIIHHSPSSFTRKPYHLPK PLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
        SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]7.4e-8283.74Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQR
        MALQI+HHSPSSFTRKPYHLP   L+FPSK KFII SQNPSESEKPISK VDDAP+ T      SS QGFGS SSQSTT+SKSSPKA     KQKGKRQR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKG
        ASIIRRSPVEKPVFVG+VDEEA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKG

Query:  DKS
        +KS
Subjt:  DKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein3.0e-8181.73Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 23.7e-7979.8Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVG------TSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQR
        MALQI+HHSPSSFT+KPYHLP   LHF SK KFIIKSQNPSESEKPISK VDDAP+       TSS+QGFGS S QST++SKS+PK+     KQKGKRQR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVG------TSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQR

Query:  ASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKG
        ASIIRRSPVEKPVFVGEVDE+  KEQ +NESYFLLTWLGLG VILVEGIVLAASGFLPE+WD+ FVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K 
Subjt:  ASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKG

Query:  DKS
        +KS
Subjt:  DKS

A0A6J1CH98 protein LOW PSII ACCUMULATION 2, chloroplastic4.8e-7982.93Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQN--PSESEKPISKTVDDAPVGT------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKR
        MALQII HSPSSFTRKPY LP IPL FPSK  F+IKSQN   SESEK ISK VDDA V T      SSAQGFGS  +QST  SK SPKAT SKGKQKGKR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQN--PSESEKPISKTVDDAPVGT------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKR

Query:  QRASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKL
        QRASIIRRSPVEKPVFVG+VDEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK 
Subjt:  QRASIIRRSPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKL

Query:  KGDKS
        KG+KS
Subjt:  KGDKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic2.0e-101100Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
        SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic3.0e-9796.95Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQIIHHSPSSFTRKPYHLPK PL+FPSK KFIIKSQ+PSESEKPISKTVDDA VGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
        SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA27.8e-4254.08Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQI  HSP SF+ +PYHL           +F IK QN S+ E   ++    +   +SS  GFGS +S S+ + K S  AT+   K KGKR+   + RR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDK
        +PVEKPVF+ E      +EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE+ DK FVKY+YP FTP+V LFVAGT AYGV KY+QNEK+KG +
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation25.5e-4354.08Show/hide
Query:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR
        MALQI  HSP SF+ +PYHL           +F IK QN S+ E   ++    +   +SS  GFGS +S S+ + K S  AT+   K KGKR+   + RR
Subjt:  MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRR

Query:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDK
        +PVEKPVF+ E      +EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPE+ DK FVKY+YP FTP+V LFVAGT AYGV KY+QNEK+KG +
Subjt:  SPVEKPVFVGEVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATC
GCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTT
CAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGA
GAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGC
ATCTGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTT
CGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCACCAGGAAACCCTATCATCTTCCCAAAATACCTCTCCATTTCCCCTCTAAGCTAAAATTCATCATCAAATC
GCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAACTGTCGACGATGCTCCAGTTGGGACCTCGTCTGCTCAAGGGTTCGGCTCGTTATCGTCTCAATCGACGACTT
CAAGCAAATCAAGTCCAAAGGCTACAACCTCTAAGGGAAAGCAGAAGGGTAAGCGGCAAAGGGCATCGATTATTCGGCGCTCACCGGTGGAGAAACCGGTGTTTGTTGGA
GAAGTAGATGAAGAAGCAATTAAGGAGCAGGGCAAGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTAATACTCGTCGAGGGGATTGTGCTTGCGGC
ATCTGGTTTCTTACCAGAGAAGTGGGATAAGTTCTTCGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCGCTGTTTGTGGCTGGAACTGTTGCATACGGAGTTT
CGAAGTATCTTCAGAATGAGAAGCTTAAAGGTGATAAATCATAATTTAATCTTTTGATTGATGTTCTGCATCTGGTATGGTGACCTGAAATGTGTCAAGTGCCTATTGAT
TGTGTTTATACTAAGTATGTCATTTGAGTGAAAAACCGAGGATGAATTTTCTTTTAGCTCAAAGGTAAATGAGATGCTGTTGTTGGATCCTCAGAAACACCTTGCCATCA
ATTTATTAGTTTCTCTGGGCTTTAAGTAATTATGTTCGATGCTCGAAGATCCTTCTGTTTGTGTATATGGCATTCCCTTGTGTTCTGATTTTTCATCTCCTTTCTTCTTC
CAAACAATCAGAGAGGGGAAGTCACAAAAGCAGGAGGCCCCATCTAAATTGATATAAAAAAGTAGAAAAATCAGTAAGAACATGTATAATTGTGAATAGAGAGAAAGCAG
TACATCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCAGCCACCATCTTGAAATAACTTTAGAAAACAAGAGTAATAAGGAAGCAGCAGTA
ACAATGGTCAGAGAGGTCTGTAAATAAGTGTGCAAACTGATACACAGAAACTGAAATTTTGAAAGCACTTTTTTGTGACCCTCTGCAGATCGAAGGGACCTAAATTGTCC
CAAAAAGAAGTGATAAAGAAGGTTGTTTGGTGCTGAGGACACTGAAAAGCAGTGTTGTTTGTGATGACCAAAAACAGAGGTTGTTTGGTTTGTTGTTGTTGCCCTCTTGA
TCCTTCTCTTCATTTAGTTTAAAAAATTGATTATTGTTTGTTTGGTAGCTCCCATTCCATTTATTAGGTAATATAAAAGGGCCTCAGAATGAGATGAAGAGTTGTTGAAT
GGGAAGGGTGGATTTGAGGTTAAAATTGGAGGCAAAAATGACT
Protein sequenceShow/hide protein sequence
MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVG
EVDEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKLKGDKS